Strain Fitness in Shewanella oneidensis MR-1 around SO3725
Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.004 vol% |
---|---|---|---|---|---|
remove | |||||
3,867,986 | - | -0.8 | |||
3,868,034 | + | -0.4 | |||
3,868,044 | + | -0.2 | |||
3,868,058 | + | +1.4 | |||
3,868,173 | - | cysC | SO3723 | 0.20 | +0.6 |
3,868,265 | - | cysC | SO3723 | 0.35 | +1.5 |
3,868,346 | - | cysC | SO3723 | 0.48 | -0.9 |
3,868,346 | - | cysC | SO3723 | 0.48 | +0.8 |
3,868,354 | + | cysC | SO3723 | 0.50 | -0.6 |
3,868,451 | - | cysC | SO3723 | 0.65 | -2.2 |
3,868,639 | + | -0.1 | |||
3,868,653 | + | -0.9 | |||
3,868,681 | - | +0.2 | |||
3,868,681 | - | -0.6 | |||
3,868,817 | + | -0.2 | |||
3,868,860 | - | -0.8 | |||
3,868,881 | - | SO3725 | 0.13 | -1.3 | |
3,869,002 | - | SO3725 | 0.51 | -2.2 | |
3,869,004 | + | SO3725 | 0.51 | -0.5 | |
3,869,041 | - | SO3725 | 0.63 | -0.2 | |
3,869,322 | - | -0.3 | |||
3,869,433 | + | cysN | SO3726 | 0.16 | +0.8 |
3,869,433 | + | cysN | SO3726 | 0.16 | +0.8 |
3,869,433 | + | cysN | SO3726 | 0.16 | +0.8 |
3,869,433 | + | cysN | SO3726 | 0.16 | -0.2 |
3,869,441 | - | cysN | SO3726 | 0.17 | -0.2 |
3,869,441 | - | cysN | SO3726 | 0.17 | -0.3 |
3,869,441 | - | cysN | SO3726 | 0.17 | +0.6 |
3,869,441 | - | cysN | SO3726 | 0.17 | -0.1 |
3,869,530 | + | cysN | SO3726 | 0.23 | +0.4 |
3,869,570 | + | cysN | SO3726 | 0.26 | -0.4 |
3,869,660 | + | cysN | SO3726 | 0.32 | -0.2 |
3,869,662 | + | cysN | SO3726 | 0.32 | +1.2 |
3,869,670 | - | cysN | SO3726 | 0.33 | +0.4 |
Or see this region's nucleotide sequence