Strain Fitness in Shewanella oneidensis MR-1 around SO3723

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,867,149	-				-1.5
3,867,152	+				+0.8
3,867,177	+				-0.3
3,867,185	-				+0.8
3,867,243	-				-0.5
3,867,272	+		SO3722	0.10	-0.5
3,867,280	-		SO3722	0.11	+0.0
3,867,416	-		SO3722	0.27	-0.1
3,867,554	+		SO3722	0.44	+1.0
3,867,554	+		SO3722	0.44	+0.1
3,867,554	+		SO3722	0.44	-1.5
3,867,554	+		SO3722	0.44	-0.3
3,867,562	-		SO3722	0.45	-0.2
3,867,562	-		SO3722	0.45	+0.5
3,867,562	-		SO3722	0.45	+0.8
3,867,569	+		SO3722	0.45	+0.1
3,867,569	+		SO3722	0.45	-0.8
3,867,569	+		SO3722	0.45	-0.5
3,867,569	+		SO3722	0.45	+0.5
3,867,577	-		SO3722	0.46	-0.1
3,867,577	-		SO3722	0.46	+0.5
3,867,577	-		SO3722	0.46	+0.3
3,867,577	-		SO3722	0.46	+0.5
3,867,577	-		SO3722	0.46	-0.8
3,867,594	-		SO3722	0.48	+0.4
3,867,622	+		SO3722	0.52	+0.1
3,867,622	+		SO3722	0.52	+0.2
3,867,725	+		SO3722	0.64	-0.1
3,867,731	+		SO3722	0.65	+0.2
3,867,739	-		SO3722	0.66	+0.1
3,867,739	-		SO3722	0.66	+0.2
3,867,739	-		SO3722	0.66	+0.4
3,867,759	-		SO3722	0.68	-0.0
3,867,764	-		SO3722	0.69	+0.2
3,867,986	-				-0.8
3,868,034	+				-0.4
3,868,044	+				-0.2
3,868,058	+				+1.4
3,868,173	-	cysC	SO3723	0.20	+0.6
3,868,265	-	cysC	SO3723	0.35	+1.5
3,868,346	-	cysC	SO3723	0.48	-0.9
3,868,346	-	cysC	SO3723	0.48	+0.8
3,868,354	+	cysC	SO3723	0.50	-0.6
3,868,451	-	cysC	SO3723	0.65	-2.2
3,868,639	+				-0.1
3,868,653	+				-0.9
3,868,681	-				+0.2
3,868,681	-				-0.6
3,868,817	+				-0.2
3,868,860	-				-0.8
3,868,881	-		SO3725	0.13	-1.3
3,869,002	-		SO3725	0.51	-2.2
3,869,004	+		SO3725	0.51	-0.5
3,869,041	-		SO3725	0.63	-0.2
3,869,322	-				-0.3
3,869,433	+	cysN	SO3726	0.16	+0.8
3,869,433	+	cysN	SO3726	0.16	+0.8
3,869,433	+	cysN	SO3726	0.16	+0.8
3,869,433	+	cysN	SO3726	0.16	-0.2
3,869,441	-	cysN	SO3726	0.17	-0.2
3,869,441	-	cysN	SO3726	0.17	-0.3
3,869,441	-	cysN	SO3726	0.17	+0.6
3,869,441	-	cysN	SO3726	0.17	-0.1
3,869,530	+	cysN	SO3726	0.23	+0.4
3,869,570	+	cysN	SO3726	0.26	-0.4
3,869,660	+	cysN	SO3726	0.32	-0.2
3,869,662	+	cysN	SO3726	0.32	+1.2