Strain Fitness in Shewanella oneidensis MR-1 around SO3559

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,716,061	+				-0.8
3,716,090	-				-0.1
3,716,163	-				+1.1
3,716,250	-				+0.4
3,716,554	-				-0.1
3,716,624	+		SO3558	0.21	-0.8
3,716,646	+		SO3558	0.26	+0.1
3,716,701	+		SO3558	0.38	+1.1
3,716,717	-		SO3558	0.42	+0.8
3,716,827	+		SO3558	0.67	+1.4
3,716,841	-		SO3558	0.70	-0.0
3,716,875	+		SO3558	0.77	-0.7
3,716,975	-				+0.1
3,717,029	+				+0.2
3,717,276	-	gshA	SO3559	0.17	-1.5
3,717,276	-	gshA	SO3559	0.17	-0.6
3,717,390	-	gshA	SO3559	0.23	-1.4
3,717,581	-	gshA	SO3559	0.35	-1.8
3,717,880	-	gshA	SO3559	0.52	+1.1
3,717,982	-	gshA	SO3559	0.58	-1.5
3,718,358	+	gshA	SO3559	0.81	-0.5
3,718,402	+	gshA	SO3559	0.83	-1.0
3,718,410	-	gshA	SO3559	0.84	-0.2
3,718,410	-	gshA	SO3559	0.84	-0.2
3,718,410	-	gshA	SO3559	0.84	-2.0
3,718,524	-				-0.2
3,718,580	-				-1.5
3,718,610	-				-0.3
3,718,746	+				-1.6
3,718,746	+				-0.6
3,718,754	+				-1.5
3,718,778	-				-1.0
3,718,844	+				-0.4
3,718,906	+				+0.3
3,718,914	-				+0.2
3,719,130	+				-0.7
3,719,138	-				-0.7
3,719,163	+				+0.2
3,719,315	+		SO3560	0.15	+0.3
3,719,337	+		SO3560	0.16	+1.5
3,719,345	-		SO3560	0.16	-1.0
3,719,424	-		SO3560	0.19	+0.6
3,719,465	-		SO3560	0.21	-0.6
3,719,470	-		SO3560	0.21	-1.9
3,719,544	-		SO3560	0.23	+0.7
3,719,585	+		SO3560	0.25	-0.2
3,719,588	-		SO3560	0.25	-0.9
3,719,632	+		SO3560	0.26	+0.2
3,719,685	+		SO3560	0.28	+0.3