Strain Fitness in Shewanella oneidensis MR-1 around SO3505

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,655,557	+		SO3504	0.30	-0.5
3,655,565	-		SO3504	0.30	+0.6
3,655,600	+		SO3504	0.33	-0.6
3,655,608	-		SO3504	0.34	-2.0
3,655,642	-		SO3504	0.37	-0.4
3,655,674	-		SO3504	0.39	+0.2
3,655,708	-		SO3504	0.42	+0.0
3,655,794	+		SO3504	0.49	-0.3
3,655,821	+		SO3504	0.52	+0.0
3,655,868	-		SO3504	0.56	+0.4
3,655,940	-		SO3504	0.62	+0.7
3,656,111	-		SO3504	0.76	-0.5
3,656,111	-		SO3504	0.76	-0.0
3,656,117	-		SO3504	0.77	-0.7
3,656,117	-		SO3504	0.77	+0.0
3,656,249	-		SO3504	0.88	-0.4
3,656,498	+				+0.8
3,656,498	+				-0.9
3,656,505	-				-1.6
3,656,549	-				-0.3
3,656,600	+				-0.1
3,656,626	-				+0.8
3,656,668	+	nagA	SO3505	0.12	+0.3
3,656,670	+	nagA	SO3505	0.12	-0.7
3,656,676	-	nagA	SO3505	0.13	+1.2
3,656,676	-	nagA	SO3505	0.13	-0.6
3,656,735	-	nagA	SO3505	0.18	+0.8
3,656,748	+	nagA	SO3505	0.19	-0.9
3,656,815	+	nagA	SO3505	0.25	+0.4
3,656,825	+	nagA	SO3505	0.26	+0.4
3,656,957	+	nagA	SO3505	0.37	-0.2
3,656,970	-	nagA	SO3505	0.39	+2.4
3,656,972	-	nagA	SO3505	0.39	+0.8
3,657,053	-	nagA	SO3505	0.46	-0.3
3,657,087	+	nagA	SO3505	0.49	-0.1
3,657,107	+	nagA	SO3505	0.51	-0.4
3,657,107	+	nagA	SO3505	0.51	+1.0
3,657,115	-	nagA	SO3505	0.51	+0.2
3,657,115	-	nagA	SO3505	0.51	-1.8
3,657,119	+	nagA	SO3505	0.52	+0.3
3,657,160	-	nagA	SO3505	0.55	-0.5
3,657,160	-	nagA	SO3505	0.55	+0.1
3,657,246	+	nagA	SO3505	0.63	-0.2
3,657,367	+	nagA	SO3505	0.73	+0.3
3,657,477	+	nagA	SO3505	0.83	-0.2
3,657,568	+				-0.3
3,657,576	-				-1.2
3,657,593	+				-0.4
3,657,601	-				-0.4
3,657,710	+				-0.0
3,657,726	-				+0.8
3,657,918	+		SO3506	0.21	+0.2
3,657,926	-		SO3506	0.21	+0.3
3,658,004	+		SO3506	0.29	-0.4
3,658,012	-		SO3506	0.30	-0.5
3,658,012	-		SO3506	0.30	-0.9
3,658,035	+		SO3506	0.32	+0.7
3,658,073	+		SO3506	0.36	+1.0
3,658,073	+		SO3506	0.36	+0.8
3,658,073	+		SO3506	0.36	+0.2
3,658,073	+		SO3506	0.36	+0.4
3,658,074	-		SO3506	0.36	+0.2
3,658,080	-		SO3506	0.37	+0.1
3,658,109	+		SO3506	0.40	-0.4
3,658,135	-		SO3506	0.42	+1.3
3,658,257	+		SO3506	0.54	+0.0
3,658,343	-		SO3506	0.63	-1.2
3,658,497	-		SO3506	0.78	-2.5