Strain Fitness in Shewanella oneidensis MR-1 around SO3462

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,607,026	+		SO3461	0.14	-0.5
3,607,240	-		SO3461	0.37	-0.1
3,607,409	+		SO3461	0.54	+0.4
3,607,498	-		SO3461	0.63	-3.0
3,607,498	-		SO3461	0.63	-0.2
3,607,539	-		SO3461	0.68	-0.5
3,607,688	+		SO3461	0.83	-0.6
3,607,696	-		SO3461	0.84	+0.8
3,607,696	-		SO3461	0.84	+2.2
3,607,748	-		SO3461	0.89	+1.0
3,607,756	+				+0.1
3,607,764	-				+0.5
3,608,047	-				-0.4
3,608,099	+				+0.9
3,608,099	+				-0.3
3,608,107	-				-1.9
3,608,107	-				-1.9
3,608,107	-				-0.9
3,608,107	-				-0.6
3,608,107	-				-3.2
3,608,107	-				-3.7
3,608,208	+	recN	SO3462	0.14	-0.7
3,608,307	+	recN	SO3462	0.20	-1.4
3,608,314	+	recN	SO3462	0.20	-1.4
3,608,322	-	recN	SO3462	0.21	-2.2
3,608,383	+	recN	SO3462	0.24	-1.8
3,608,450	-	recN	SO3462	0.28	-1.7
3,608,489	-	recN	SO3462	0.31	-0.7
3,608,646	+	recN	SO3462	0.40	-2.0
3,608,655	-	recN	SO3462	0.41	-1.4
3,608,721	+	recN	SO3462	0.45	-1.2
3,608,750	+	recN	SO3462	0.47	-2.7
3,608,764	-	recN	SO3462	0.47	-2.1
3,608,855	-	recN	SO3462	0.53	-1.5
3,608,856	-	recN	SO3462	0.53	-1.1
3,608,890	+	recN	SO3462	0.55	-0.2
3,608,933	-	recN	SO3462	0.58	+0.2
3,609,078	-	recN	SO3462	0.66	-0.6
3,609,089	+	recN	SO3462	0.67	-0.7
3,609,097	-	recN	SO3462	0.67	-0.5
3,609,396	-	recN	SO3462	0.85	-0.7
3,609,413	+	recN	SO3462	0.86	-2.8
3,609,413	+	recN	SO3462	0.86	-0.5
3,609,413	+	recN	SO3462	0.86	-1.7
3,609,421	-	recN	SO3462	0.87	-1.4
3,609,421	-	recN	SO3462	0.87	-0.7
3,609,998	-	pgpA	SO3463	0.45	-0.3
3,610,027	-	pgpA	SO3463	0.51	+0.2