Strain Fitness in Shewanella oneidensis MR-1 around SO3429

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,572,474	+				+0.1
3,572,474	+				+0.1
3,572,482	-				-0.2
3,572,482	-				+0.3
3,572,482	-				-0.1
3,572,482	-				+1.0
3,572,482	-				-1.0
3,572,482	-				-0.8
3,572,482	-				-0.1
3,572,482	-				+0.3
3,572,482	-				+0.1
3,572,532	+				+0.4
3,572,539	-				-0.1
3,572,544	+				-0.1
3,572,584	+				+0.6
3,572,610	+				+0.9
3,572,686	-				-1.0
3,572,784	+	recX	SO3429	0.34	+1.4
3,572,792	-	recX	SO3429	0.36	-0.3
3,572,792	-	recX	SO3429	0.36	+1.8
3,572,895	+	recX	SO3429	0.63	+1.1
3,572,947	+	recX	SO3429	0.76	+0.5
3,572,947	+	recX	SO3429	0.76	+0.3
3,572,983	+	recX	SO3429	0.86	-0.5
3,572,991	-	recX	SO3429	0.88	+0.3
3,573,027	-				+0.4
3,573,063	-				-0.2
3,573,149	+				-1.2
3,573,157	-				+0.5
3,573,231	-				-1.2
3,573,319	+	recA	SO3430	0.16	-2.5
3,573,327	-	recA	SO3430	0.16	-2.5
3,573,445	-	recA	SO3430	0.27	-3.5
3,573,521	-	recA	SO3430	0.34	-3.0
3,573,534	+	recA	SO3430	0.36	-2.2
3,573,660	-	recA	SO3430	0.47	-2.5
3,573,670	-	recA	SO3430	0.48	-1.5
3,573,679	-	recA	SO3430	0.49	-2.9
3,573,689	+	recA	SO3430	0.50	-3.1
3,573,823	+	recA	SO3430	0.63	-4.0
3,573,855	-	recA	SO3430	0.66	-3.4
3,573,950	+	recA	SO3430	0.74	-0.8
3,573,955	+	recA	SO3430	0.75	-2.9
3,573,955	+	recA	SO3430	0.75	-2.7
3,573,955	+	recA	SO3430	0.75	-1.8
3,573,955	+	recA	SO3430	0.75	-2.2
3,573,963	-	recA	SO3430	0.76	-0.2
3,573,963	-	recA	SO3430	0.76	-3.1
3,573,963	-	recA	SO3430	0.76	-2.9