Strain Fitness in Shewanella oneidensis MR-1 around SO3263

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,398,520	+	ilvB	SO3262	0.41	+0.1
3,398,520	+	ilvB	SO3262	0.41	-1.1
3,398,528	-	ilvB	SO3262	0.42	-0.8
3,398,667	-	ilvB	SO3262	0.50	-0.3
3,398,667	-	ilvB	SO3262	0.50	-3.8
3,398,768	+	ilvB	SO3262	0.55	-1.2
3,398,768	+	ilvB	SO3262	0.55	+0.8
3,398,768	+	ilvB	SO3262	0.55	-1.9
3,398,768	+	ilvB	SO3262	0.55	-1.2
3,398,768	+	ilvB	SO3262	0.55	-0.9
3,398,768	+	ilvB	SO3262	0.55	-0.6
3,398,776	-	ilvB	SO3262	0.56	-1.3
3,398,776	-	ilvB	SO3262	0.56	-1.7
3,398,776	-	ilvB	SO3262	0.56	-2.1
3,398,776	-	ilvB	SO3262	0.56	-1.7
3,398,776	-	ilvB	SO3262	0.56	-2.6
3,398,786	-	ilvB	SO3262	0.56	-1.2
3,398,980	+	ilvB	SO3262	0.68	-1.6
3,398,988	-	ilvB	SO3262	0.68	-1.1
3,398,988	-	ilvB	SO3262	0.68	-2.2
3,398,997	+	ilvB	SO3262	0.69	-0.8
3,399,071	-	ilvB	SO3262	0.73	-1.8
3,399,096	+	ilvB	SO3262	0.74	-1.3
3,399,172	+	ilvB	SO3262	0.79	-0.2
3,399,195	-	ilvB	SO3262	0.80	-1.0
3,399,204	-	ilvB	SO3262	0.80	-0.7
3,399,341	-	ilvB	SO3262	0.88	-0.9
3,399,368	+	ilvB	SO3262	0.90	-1.3
3,399,454	-				-0.9
3,399,454	-				-1.3
3,399,499	-				-1.9
3,399,517	-				-0.2
3,399,532	+				-1.0
3,399,592	+		SO3263	0.11	-0.5
3,399,713	-		SO3263	0.27	-1.4
3,399,719	-		SO3263	0.28	-1.0
3,399,725	+		SO3263	0.29	-1.7
3,399,725	+		SO3263	0.29	-1.9
3,399,733	-		SO3263	0.30	-1.3
3,399,852	+		SO3263	0.45	-0.9
3,399,852	+		SO3263	0.45	-0.6
3,399,852	+		SO3263	0.45	-0.7
3,399,857	+		SO3263	0.46	-0.2
3,399,876	+		SO3263	0.48	-1.3
3,399,880	-		SO3263	0.49	-1.5
3,399,880	-		SO3263	0.49	-0.1
3,399,880	-		SO3263	0.49	-0.9
3,400,171	+		SO3263	0.87	-0.9
3,400,171	+		SO3263	0.87	-2.0
3,400,217	+				-1.6
3,400,346	+				-0.6
3,400,346	+				+0.2
3,400,354	-				-0.5
3,400,472	+		SO3264	0.15	-0.1
3,400,578	+		SO3264	0.24	+0.4
3,400,588	-		SO3264	0.25	-0.2
3,400,604	-		SO3264	0.26	-1.2
3,400,613	-		SO3264	0.27	-1.7
3,400,732	+		SO3264	0.37	+0.1
3,400,757	-		SO3264	0.39	-0.4
3,400,778	-		SO3264	0.41	-0.1
3,400,807	-		SO3264	0.43	-0.4
3,400,876	-		SO3264	0.49	-0.3
3,400,935	-		SO3264	0.54	-0.2
3,400,938	+		SO3264	0.54	-0.4
3,400,956	+		SO3264	0.56	-1.5
3,401,003	+		SO3264	0.60	+1.2
3,401,066	-		SO3264	0.65	+0.8
3,401,066	-		SO3264	0.65	-0.3
3,401,154	+		SO3264	0.73	+0.5
3,401,154	+		SO3264	0.73	+0.1
3,401,162	-		SO3264	0.73	-0.4
3,401,162	-		SO3264	0.73	+0.4
3,401,162	-		SO3264	0.73	+0.1
3,401,191	+		SO3264	0.76	+0.2
3,401,227	+		SO3264	0.79	-0.4
3,401,237	+		SO3264	0.80	-0.9