Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3260 and SO3261 are separated by 67 nucleotides SO3261 and ilvB overlap by 1 nucleotides ilvB and SO3263 overlap by 41 nucleotides SO3263 and SO3264 are separated by 19 nucleotides
SO3260: SO3260 - hypothetical protein (NCBI ptt file), at 3,396,591 to 3,396,860
SO3260
SO3261: SO3261 - polysaccharide biosynthesis related-protein (NCBI ptt file), at 3,396,928 to 3,397,800
SO3261
SO3262: ilvB - acetolactate synthase isozyme I, large subunit (NCBI ptt file), at 3,397,800 to 3,399,545
ilvB
SO3263: SO3263 - 3-oxoacyl-(acyl-carrier-protein) reductase, putative (NCBI ptt file), at 3,399,505 to 3,400,272
SO3263
SO3264: SO3264 - hypothetical protein (NCBI ptt file), at 3,400,292 to 3,401,479
SO3264
Position (kb)
3397
3398
3399
3400 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3396.868 kb on + strand at 3396.901 kb on + strand at 3396.995 kb on + strand at 3396.995 kb on + strand at 3396.995 kb on + strand at 3396.995 kb on + strand at 3397.003 kb on - strand at 3397.051 kb on - strand, within SO3261 at 3397.061 kb on - strand, within SO3261 at 3397.188 kb on - strand, within SO3261 at 3397.214 kb on + strand, within SO3261 at 3397.233 kb on - strand, within SO3261 at 3397.343 kb on - strand, within SO3261 at 3397.405 kb on - strand, within SO3261 at 3397.412 kb on + strand, within SO3261 at 3397.412 kb on + strand, within SO3261 at 3397.499 kb on + strand, within SO3261 at 3397.521 kb on - strand, within SO3261 at 3397.547 kb on + strand, within SO3261 at 3397.620 kb on - strand, within SO3261 at 3397.643 kb on + strand, within SO3261 at 3397.655 kb on + strand, within SO3261 at 3397.722 kb on - strand at 3397.938 kb on - strand at 3397.988 kb on + strand, within ilvB at 3398.026 kb on + strand, within ilvB at 3398.026 kb on + strand, within ilvB at 3398.026 kb on + strand, within ilvB at 3398.026 kb on + strand, within ilvB at 3398.034 kb on - strand, within ilvB at 3398.037 kb on + strand, within ilvB at 3398.045 kb on - strand, within ilvB at 3398.100 kb on - strand, within ilvB at 3398.234 kb on + strand, within ilvB at 3398.295 kb on - strand, within ilvB at 3398.385 kb on + strand, within ilvB at 3398.385 kb on + strand, within ilvB at 3398.385 kb on + strand, within ilvB at 3398.393 kb on - strand, within ilvB at 3398.419 kb on + strand, within ilvB at 3398.475 kb on + strand, within ilvB at 3398.520 kb on + strand, within ilvB at 3398.520 kb on + strand, within ilvB at 3398.528 kb on - strand, within ilvB at 3398.667 kb on - strand, within ilvB at 3398.667 kb on - strand, within ilvB at 3398.768 kb on + strand, within ilvB at 3398.768 kb on + strand, within ilvB at 3398.768 kb on + strand, within ilvB at 3398.768 kb on + strand, within ilvB at 3398.768 kb on + strand, within ilvB at 3398.768 kb on + strand, within ilvB at 3398.776 kb on - strand, within ilvB at 3398.776 kb on - strand, within ilvB at 3398.776 kb on - strand, within ilvB at 3398.776 kb on - strand, within ilvB at 3398.776 kb on - strand, within ilvB at 3398.786 kb on - strand, within ilvB at 3398.980 kb on + strand, within ilvB at 3398.988 kb on - strand, within ilvB at 3398.988 kb on - strand, within ilvB at 3398.997 kb on + strand, within ilvB at 3399.071 kb on - strand, within ilvB at 3399.096 kb on + strand, within ilvB at 3399.172 kb on + strand, within ilvB at 3399.195 kb on - strand, within ilvB at 3399.204 kb on - strand, within ilvB at 3399.341 kb on - strand, within ilvB at 3399.368 kb on + strand, within ilvB at 3399.454 kb on - strand at 3399.454 kb on - strand at 3399.499 kb on - strand at 3399.517 kb on - strand at 3399.532 kb on + strand at 3399.592 kb on + strand, within SO3263 at 3399.713 kb on - strand, within SO3263 at 3399.719 kb on - strand, within SO3263 at 3399.725 kb on + strand, within SO3263 at 3399.725 kb on + strand, within SO3263 at 3399.733 kb on - strand, within SO3263 at 3399.852 kb on + strand, within SO3263 at 3399.852 kb on + strand, within SO3263 at 3399.852 kb on + strand, within SO3263 at 3399.857 kb on + strand, within SO3263 at 3399.876 kb on + strand, within SO3263 at 3399.880 kb on - strand, within SO3263 at 3399.880 kb on - strand, within SO3263 at 3399.880 kb on - strand, within SO3263 at 3400.171 kb on + strand, within SO3263 at 3400.171 kb on + strand, within SO3263 at 3400.217 kb on + strand at 3400.346 kb on + strand at 3400.346 kb on + strand at 3400.354 kb on - strand at 3400.472 kb on + strand, within SO3264
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 3,396,868 + +0.7 3,396,901 + +0.6 3,396,995 + -0.3 3,396,995 + -1.4 3,396,995 + -2.1 3,396,995 + -2.2 3,397,003 - -0.3 3,397,051 - SO3261 0.14 -0.4 3,397,061 - SO3261 0.15 +0.3 3,397,188 - SO3261 0.30 -1.0 3,397,214 + SO3261 0.33 +0.0 3,397,233 - SO3261 0.35 -0.5 3,397,343 - SO3261 0.48 -0.7 3,397,405 - SO3261 0.55 -0.9 3,397,412 + SO3261 0.55 -1.3 3,397,412 + SO3261 0.55 -1.2 3,397,499 + SO3261 0.65 -0.8 3,397,521 - SO3261 0.68 -0.7 3,397,547 + SO3261 0.71 -0.5 3,397,620 - SO3261 0.79 -2.0 3,397,643 + SO3261 0.82 +0.4 3,397,655 + SO3261 0.83 -1.5 3,397,722 - -0.8 3,397,938 - -0.4 3,397,988 + ilvB SO3262 0.11 -1.5 3,398,026 + ilvB SO3262 0.13 -0.6 3,398,026 + ilvB SO3262 0.13 -2.6 3,398,026 + ilvB SO3262 0.13 -0.7 3,398,026 + ilvB SO3262 0.13 -0.9 3,398,034 - ilvB SO3262 0.13 -1.5 3,398,037 + ilvB SO3262 0.14 -0.8 3,398,045 - ilvB SO3262 0.14 -0.5 3,398,100 - ilvB SO3262 0.17 -0.5 3,398,234 + ilvB SO3262 0.25 -2.2 3,398,295 - ilvB SO3262 0.28 -2.2 3,398,385 + ilvB SO3262 0.34 -0.5 3,398,385 + ilvB SO3262 0.34 -0.4 3,398,385 + ilvB SO3262 0.34 -0.8 3,398,393 - ilvB SO3262 0.34 -1.6 3,398,419 + ilvB SO3262 0.35 -0.2 3,398,475 + ilvB SO3262 0.39 -0.2 3,398,520 + ilvB SO3262 0.41 +0.1 3,398,520 + ilvB SO3262 0.41 -1.1 3,398,528 - ilvB SO3262 0.42 -0.8 3,398,667 - ilvB SO3262 0.50 -0.3 3,398,667 - ilvB SO3262 0.50 -3.8 3,398,768 + ilvB SO3262 0.55 -1.2 3,398,768 + ilvB SO3262 0.55 +0.8 3,398,768 + ilvB SO3262 0.55 -1.9 3,398,768 + ilvB SO3262 0.55 -1.2 3,398,768 + ilvB SO3262 0.55 -0.9 3,398,768 + ilvB SO3262 0.55 -0.6 3,398,776 - ilvB SO3262 0.56 -1.3 3,398,776 - ilvB SO3262 0.56 -1.7 3,398,776 - ilvB SO3262 0.56 -2.1 3,398,776 - ilvB SO3262 0.56 -1.7 3,398,776 - ilvB SO3262 0.56 -2.6 3,398,786 - ilvB SO3262 0.56 -1.2 3,398,980 + ilvB SO3262 0.68 -1.6 3,398,988 - ilvB SO3262 0.68 -1.1 3,398,988 - ilvB SO3262 0.68 -2.2 3,398,997 + ilvB SO3262 0.69 -0.8 3,399,071 - ilvB SO3262 0.73 -1.8 3,399,096 + ilvB SO3262 0.74 -1.3 3,399,172 + ilvB SO3262 0.79 -0.2 3,399,195 - ilvB SO3262 0.80 -1.0 3,399,204 - ilvB SO3262 0.80 -0.7 3,399,341 - ilvB SO3262 0.88 -0.9 3,399,368 + ilvB SO3262 0.90 -1.3 3,399,454 - -0.9 3,399,454 - -1.3 3,399,499 - -1.9 3,399,517 - -0.2 3,399,532 + -1.0 3,399,592 + SO3263 0.11 -0.5 3,399,713 - SO3263 0.27 -1.4 3,399,719 - SO3263 0.28 -1.0 3,399,725 + SO3263 0.29 -1.7 3,399,725 + SO3263 0.29 -1.9 3,399,733 - SO3263 0.30 -1.3 3,399,852 + SO3263 0.45 -0.9 3,399,852 + SO3263 0.45 -0.6 3,399,852 + SO3263 0.45 -0.7 3,399,857 + SO3263 0.46 -0.2 3,399,876 + SO3263 0.48 -1.3 3,399,880 - SO3263 0.49 -1.5 3,399,880 - SO3263 0.49 -0.1 3,399,880 - SO3263 0.49 -0.9 3,400,171 + SO3263 0.87 -0.9 3,400,171 + SO3263 0.87 -2.0 3,400,217 + -1.6 3,400,346 + -0.6 3,400,346 + +0.2 3,400,354 - -0.5 3,400,472 + SO3264 0.15 -0.1
Or see this region's nucleotide sequence