Strain Fitness in Shewanella oneidensis MR-1 around SO3253

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,389,940	+	cheV-3	SO3252	0.18	+0.8
3,389,940	+	cheV-3	SO3252	0.18	-1.1
3,389,958	-	cheV-3	SO3252	0.20	-0.5
3,390,067	-	cheV-3	SO3252	0.31	+0.0
3,390,120	-	cheV-3	SO3252	0.37	+1.0
3,390,162	+	cheV-3	SO3252	0.42	-0.2
3,390,188	+	cheV-3	SO3252	0.45	+0.4
3,390,188	+	cheV-3	SO3252	0.45	-0.3
3,390,188	+	cheV-3	SO3252	0.45	-0.2
3,390,201	-	cheV-3	SO3252	0.46	-0.1
3,390,310	-	cheV-3	SO3252	0.58	+0.4
3,390,315	-	cheV-3	SO3252	0.58	+0.8
3,390,315	-	cheV-3	SO3252	0.58	+1.0
3,390,328	+	cheV-3	SO3252	0.60	-0.8
3,390,335	+	cheV-3	SO3252	0.60	+0.6
3,390,343	-	cheV-3	SO3252	0.61	+0.6
3,390,351	+	cheV-3	SO3252	0.62	+0.2
3,390,383	+	cheV-3	SO3252	0.66	+0.3
3,390,398	-	cheV-3	SO3252	0.67	-1.4
3,390,456	+	cheV-3	SO3252	0.74	-0.9
3,390,456	+	cheV-3	SO3252	0.74	-0.9
3,390,456	+	cheV-3	SO3252	0.74	-0.0
3,390,464	-	cheV-3	SO3252	0.74	+1.5
3,390,517	+	cheV-3	SO3252	0.80	-0.5
3,390,525	-	cheV-3	SO3252	0.81	-0.5
3,390,525	-	cheV-3	SO3252	0.81	-0.1
3,390,529	+	cheV-3	SO3252	0.82	-0.6
3,390,540	+	cheV-3	SO3252	0.83	+0.1
3,390,549	+	cheV-3	SO3252	0.84	+1.0
3,390,557	-	cheV-3	SO3252	0.85	+0.4
3,390,635	+				+0.1
3,390,643	-				-1.4
3,390,645	+				+0.9
3,390,645	+				+0.2
3,390,653	-				+0.5
3,390,653	-				-0.6
3,390,695	+				-0.5
3,390,695	+				-0.0
3,390,703	-				+0.2
3,390,705	+				+0.3
3,390,708	+				-0.1
3,390,710	+				-0.3
3,390,718	+				-0.0
3,390,844	-				-2.0
3,390,846	+				+0.1
3,390,864	+				+0.6
3,390,872	-				-0.9
3,390,882	-				-1.6
3,390,974	+				-0.2
3,390,974	+				-1.7
3,390,974	+				-1.0
3,390,976	+		SO3253	0.10	-1.3
3,390,984	-		SO3253	0.11	-1.3
3,390,994	-		SO3253	0.13	-0.6
3,390,996	-		SO3253	0.13	-1.6
3,391,084	-		SO3253	0.25	-0.6
3,391,121	+		SO3253	0.31	-1.8
3,391,155	+		SO3253	0.35	-0.5
3,391,155	+		SO3253	0.35	-0.4
3,391,163	+		SO3253	0.37	-1.8
3,391,196	-		SO3253	0.41	-0.9
3,391,199	+		SO3253	0.42	-0.1
3,391,202	-		SO3253	0.42	-1.3
3,391,202	-		SO3253	0.42	-0.8
3,391,258	+		SO3253	0.50	-0.4
3,391,258	+		SO3253	0.50	-0.1
3,391,263	+		SO3253	0.51	-1.1
3,391,264	-		SO3253	0.51	+0.8
3,391,265	+		SO3253	0.51	-2.2
3,391,265	+		SO3253	0.51	-1.3
3,391,273	-		SO3253	0.52	-3.6
3,391,273	-		SO3253	0.52	-2.8
3,391,289	+		SO3253	0.54	-0.2
3,391,289	+		SO3253	0.54	-0.4
3,391,308	-		SO3253	0.57	-2.2
3,391,337	+		SO3253	0.61	-0.8
3,391,362	+		SO3253	0.65	+0.6
3,391,362	+		SO3253	0.65	-0.6
3,391,370	-		SO3253	0.66	-1.6
3,391,370	-		SO3253	0.66	-0.6
3,391,370	-		SO3253	0.66	-1.7
3,391,370	-		SO3253	0.66	-1.4
3,391,383	+		SO3253	0.68	-1.0
3,391,391	-		SO3253	0.69	-1.0
3,391,422	+		SO3253	0.73	-0.5
3,391,496	+		SO3253	0.84	-2.6
3,391,510	-		SO3253	0.86	-1.4
3,391,616	+				+0.6
3,391,667	+				-0.7
3,391,731	+	flgM	SO3254	0.14	-2.5
3,391,745	+	flgM	SO3254	0.18	-0.4
3,391,745	+	flgM	SO3254	0.18	-0.1
3,391,745	+	flgM	SO3254	0.18	-0.3
3,391,745	+	flgM	SO3254	0.18	+0.6
3,391,745	+	flgM	SO3254	0.18	-1.6
3,391,745	+	flgM	SO3254	0.18	+0.1
3,391,745	+	flgM	SO3254	0.18	-0.5
3,391,745	+	flgM	SO3254	0.18	-1.2
3,391,745	+	flgM	SO3254	0.18	-0.4
3,391,745	+	flgM	SO3254	0.18	+0.0
3,391,845	+	flgM	SO3254	0.49	+0.2
3,391,845	+	flgM	SO3254	0.49	+0.6
3,391,987	+				-0.6
3,392,042	+				-1.5
3,392,253	+	flgN	SO3255	0.55	-0.8
3,392,266	-	flgN	SO3255	0.58	-1.9
3,392,266	-	flgN	SO3255	0.58	-0.8
3,392,336	+	flgN	SO3255	0.75	-0.2
3,392,341	+	flgN	SO3255	0.76	-0.5
3,392,349	-	flgN	SO3255	0.78	-0.8
3,392,394	+	flgN	SO3255	0.88	+0.7
3,392,529	-				+0.9
3,392,530	+				+0.8
3,392,540	+				+0.5
3,392,548	-				+0.4
3,392,548	-				-0.0
3,392,548	-				+0.5