Strain Fitness in Shewanella oneidensis MR-1 around SO3249

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,386,913	-				-2.8
3,386,952	-				-1.5
3,387,062	+				-0.0
3,387,070	-				+0.6
3,387,096	-				-0.2
3,387,106	-				-1.5
3,387,187	-	flgD	SO3248	0.16	-0.3
3,387,292	-	flgD	SO3248	0.30	-0.2
3,387,327	+	flgD	SO3248	0.34	-0.5
3,387,390	+	flgD	SO3248	0.43	-1.1
3,387,457	+	flgD	SO3248	0.51	+0.1
3,387,489	-	flgD	SO3248	0.56	-0.8
3,387,611	-	flgD	SO3248	0.72	-0.6
3,387,612	-	flgD	SO3248	0.72	-1.0
3,387,629	-	flgD	SO3248	0.74	-1.6
3,387,761	-				-1.1
3,387,823	-				-0.6
3,387,854	+				-2.4
3,387,906	-				-1.2
3,387,954	+	flgC	SO3249	0.20	-3.4
3,388,058	-	flgC	SO3249	0.45	-1.5
3,388,069	+	flgC	SO3249	0.48	+1.4
3,388,092	+	flgC	SO3249	0.53	-0.6
3,388,100	-	flgC	SO3249	0.55	-2.4
3,388,111	-	flgC	SO3249	0.58	-1.1
3,388,121	-	flgC	SO3249	0.60	-1.6
3,388,158	+	flgC	SO3249	0.69	+0.2
3,388,246	+				-1.4
3,388,503	+	flgB	SO3250	0.53	-1.8
3,388,503	+	flgB	SO3250	0.53	-1.8
3,388,503	+	flgB	SO3250	0.53	-0.9
3,388,503	+	flgB	SO3250	0.53	-2.8
3,388,521	-	flgB	SO3250	0.58	-1.4
3,388,521	-	flgB	SO3250	0.58	-0.9
3,388,642	-	flgB	SO3250	0.87	-0.9
3,388,664	-				-0.8
3,388,664	-				-1.4
3,388,936	+	cheR-2	SO3251	0.12	-0.3
3,388,936	+	cheR-2	SO3251	0.12	+0.1
3,388,936	+	cheR-2	SO3251	0.12	-0.3
3,388,937	+	cheR-2	SO3251	0.12	+0.9
3,388,944	-	cheR-2	SO3251	0.13	+0.0
3,388,945	-	cheR-2	SO3251	0.13	+0.0
3,389,047	+	cheR-2	SO3251	0.25	-0.5
3,389,055	-	cheR-2	SO3251	0.26	-0.6
3,389,055	-	cheR-2	SO3251	0.26	-1.1
3,389,254	+	cheR-2	SO3251	0.50	-2.2
3,389,262	-	cheR-2	SO3251	0.51	-0.6