Strain Fitness in Shewanella oneidensis MR-1 around SO3247

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,384,846	-	flgF	SO3245	0.17	-1.6
3,384,852	+	flgF	SO3245	0.18	-0.9
3,384,855	-	flgF	SO3245	0.18	-0.6
3,384,855	-	flgF	SO3245	0.18	+0.3
3,384,906	+	flgF	SO3245	0.25	-0.6
3,384,978	+	flgF	SO3245	0.35	-1.4
3,384,987	-	flgF	SO3245	0.36	-0.6
3,385,020	-	flgF	SO3245	0.40	-1.2
3,385,164	+	flgF	SO3245	0.60	-0.2
3,385,164	+	flgF	SO3245	0.60	-0.9
3,385,172	-	flgF	SO3245	0.61	-1.0
3,385,226	+	flgF	SO3245	0.68	-2.9
3,385,226	+	flgF	SO3245	0.68	-1.2
3,385,226	+	flgF	SO3245	0.68	-0.9
3,385,226	+	flgF	SO3245	0.68	+1.6
3,385,234	-	flgF	SO3245	0.69	-0.9
3,385,372	+	flgF	SO3245	0.88	-0.9
3,385,432	-				-1.4
3,385,587	+				+0.2
3,385,595	-				-0.6
3,385,677	+				-1.3
3,385,783	-	flgE	SO3247	0.11	-1.0
3,385,807	-	flgE	SO3247	0.13	+1.0
3,385,807	-	flgE	SO3247	0.13	-1.4
3,385,807	-	flgE	SO3247	0.13	-0.5
3,385,867	+	flgE	SO3247	0.17	-1.0
3,385,948	+	flgE	SO3247	0.23	-2.8
3,385,956	-	flgE	SO3247	0.23	-0.6
3,386,005	-	flgE	SO3247	0.27	-2.1
3,386,147	+	flgE	SO3247	0.38	-2.5
3,386,155	-	flgE	SO3247	0.38	-0.5
3,386,182	+	flgE	SO3247	0.40	-0.5
3,386,190	-	flgE	SO3247	0.41	-0.2
3,386,212	+	flgE	SO3247	0.42	-0.5
3,386,212	+	flgE	SO3247	0.42	-1.8
3,386,220	-	flgE	SO3247	0.43	-1.4
3,386,245	-	flgE	SO3247	0.45	-0.6
3,386,249	+	flgE	SO3247	0.45	-0.7
3,386,319	+	flgE	SO3247	0.50	-2.4
3,386,351	-	flgE	SO3247	0.52	-0.6
3,386,393	-	flgE	SO3247	0.56	-2.5
3,386,439	-	flgE	SO3247	0.59	-0.5
3,386,526	+	flgE	SO3247	0.65	-1.3
3,386,534	-	flgE	SO3247	0.66	-1.3
3,386,561	+	flgE	SO3247	0.68	+0.4
3,386,569	-	flgE	SO3247	0.69	-1.0
3,386,749	-	flgE	SO3247	0.82	-1.2
3,386,913	-				-2.8
3,386,952	-				-1.5
3,387,062	+				-0.0
3,387,070	-				+0.6
3,387,096	-				-0.2
3,387,106	-				-1.5
3,387,187	-	flgD	SO3248	0.16	-0.3
3,387,292	-	flgD	SO3248	0.30	-0.2
3,387,327	+	flgD	SO3248	0.34	-0.5
3,387,390	+	flgD	SO3248	0.43	-1.1
3,387,457	+	flgD	SO3248	0.51	+0.1
3,387,489	-	flgD	SO3248	0.56	-0.8
3,387,611	-	flgD	SO3248	0.72	-0.6
3,387,612	-	flgD	SO3248	0.72	-1.0
3,387,629	-	flgD	SO3248	0.74	-1.6
3,387,761	-				-1.1
3,387,823	-				-0.6
3,387,854	+				-2.4
3,387,906	-				-1.2
3,387,954	+	flgC	SO3249	0.20	-3.4