Strain Fitness in Shewanella oneidensis MR-1 around SO3239

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3238 and flgL are separated by 95 nucleotidesflgL and SO_3240 are separated by 11 nucleotidesSO_3240 and SO3239.2 overlap by 13 nucleotidesSO3239.2 and SO3239.3 are separated by 56 nucleotides SO3238: SO3238 - flagellin (NCBI ptt file), at 3,376,855 to 3,377,676 SO3238 SO3239: flgL - flagellar hook-associated protein FlgL (NCBI ptt file), at 3,377,772 to 3,378,983 flgL SO_3240: SO_3240 - no description, at 3,378,995 to 3,379,288 _3240 SO3239.2: SO3239.2 - hypothetical flagellar protein (NCBI ptt file), at 3,379,276 to 3,379,701 SO3239.2 SO3239.3: SO3239.3 - hypothetical flagellar hook-associated protein (NCBI ptt file), at 3,379,758 to 3,380,918 SO3239.3 Position (kb) 3377 3378 3379Strain fitness (log2 ratio) -2 -1 0 1at 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.846 kb on + strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.854 kb on - strandat 3376.858 kb on + strandat 3376.858 kb on + strandat 3376.858 kb on + strandat 3376.866 kb on - strandat 3376.866 kb on - strandat 3377.040 kb on + strand, within SO3238at 3377.295 kb on + strand, within SO3238at 3377.313 kb on - strand, within SO3238at 3377.399 kb on + strand, within SO3238at 3377.506 kb on - strand, within SO3238at 3377.556 kb on - strand, within SO3238at 3377.573 kb on + strand, within SO3238at 3377.578 kb on + strand, within SO3238at 3377.674 kb on - strandat 3377.716 kb on - strandat 3377.751 kb on + strandat 3377.751 kb on + strandat 3377.758 kb on - strandat 3377.759 kb on - strandat 3377.789 kb on + strandat 3377.789 kb on + strandat 3377.825 kb on - strandat 3377.871 kb on + strandat 3377.885 kb on - strandat 3378.165 kb on - strand, within flgLat 3378.170 kb on - strand, within flgLat 3378.626 kb on + strand, within flgLat 3378.822 kb on - strand, within flgLat 3378.846 kb on + strand, within flgLat 3378.858 kb on - strand, within flgLat 3378.889 kb on + strandat 3378.970 kb on + strandat 3378.978 kb on - strandat 3379.178 kb on + strand, within SO_3240at 3379.222 kb on + strand, within SO_3240at 3379.230 kb on - strand, within SO_3240at 3379.269 kb on + strandat 3379.455 kb on + strand, within SO3239.2at 3379.476 kb on - strand, within SO3239.2at 3379.565 kb on + strand, within SO3239.2at 3379.619 kb on + strand, within SO3239.2at 3379.619 kb on + strand, within SO3239.2at 3379.639 kb on - strand, within SO3239.2at 3379.641 kb on - strand, within SO3239.2at 3379.747 kb on - strandat 3379.756 kb on + strandat 3379.968 kb on + strand, within SO3239.3at 3379.982 kb on + strand, within SO3239.3

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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3,376,846 + -0.6
3,376,846 + -0.1
3,376,846 + +0.1
3,376,846 + -0.1
3,376,846 + +0.1
3,376,846 + -0.6
3,376,846 + -0.8
3,376,846 + +0.2
3,376,846 + +0.1
3,376,846 + +0.3
3,376,846 + +0.6
3,376,846 + +1.0
3,376,846 + -0.0
3,376,846 + +0.4
3,376,846 + +0.5
3,376,846 + +1.1
3,376,846 + -0.6
3,376,846 + -0.2
3,376,846 + +0.3
3,376,846 + +0.7
3,376,854 - -0.5
3,376,854 - -0.4
3,376,854 - -0.9
3,376,854 - -0.0
3,376,854 - +0.7
3,376,854 - +0.6
3,376,854 - +0.4
3,376,854 - +0.2
3,376,854 - +1.2
3,376,854 - -1.0
3,376,854 - +0.9
3,376,854 - +1.0
3,376,854 - +1.2
3,376,854 - +0.1
3,376,854 - +0.5
3,376,854 - -0.9
3,376,854 - -0.1
3,376,854 - +0.1
3,376,854 - -0.2
3,376,854 - -0.1
3,376,854 - -0.2
3,376,854 - +0.8
3,376,858 + -1.2
3,376,858 + -0.9
3,376,858 + -0.2
3,376,866 - -1.6
3,376,866 - -1.2
3,377,040 + SO3238 0.23 -0.6
3,377,295 + SO3238 0.54 -1.5
3,377,313 - SO3238 0.56 +0.8
3,377,399 + SO3238 0.66 +0.3
3,377,506 - SO3238 0.79 +1.0
3,377,556 - SO3238 0.85 -0.1
3,377,573 + SO3238 0.87 +0.5
3,377,578 + SO3238 0.88 +0.1
3,377,674 - +0.7
3,377,716 - +1.1
3,377,751 + +0.1
3,377,751 + +0.5
3,377,758 - +0.4
3,377,759 - -0.1
3,377,789 + -0.6
3,377,789 + -1.4
3,377,825 - -0.8
3,377,871 + -0.8
3,377,885 - -1.1
3,378,165 - flgL SO3239 0.32 -1.0
3,378,170 - flgL SO3239 0.33 -2.0
3,378,626 + flgL SO3239 0.70 -0.9
3,378,822 - flgL SO3239 0.87 -0.5
3,378,846 + flgL SO3239 0.89 -2.4
3,378,858 - flgL SO3239 0.90 -1.5
3,378,889 + +0.8
3,378,970 + -2.0
3,378,978 - +0.8
3,379,178 + SO_3240 0.62 -0.2
3,379,222 + SO_3240 0.77 -1.6
3,379,230 - SO_3240 0.80 -1.7
3,379,269 + -1.7
3,379,455 + SO3239.2 0.42 -0.4
3,379,476 - SO3239.2 0.47 -2.0
3,379,565 + SO3239.2 0.68 -1.3
3,379,619 + SO3239.2 0.81 -0.6
3,379,619 + SO3239.2 0.81 -1.1
3,379,639 - SO3239.2 0.85 -1.8
3,379,641 - SO3239.2 0.86 -0.8
3,379,747 - -0.4
3,379,756 + -0.8
3,379,968 + SO3239.3 0.18 -0.3
3,379,982 + SO3239.3 0.19 -0.2

Or see this region's nucleotide sequence