Strain Fitness in Shewanella oneidensis MR-1 around SO3232

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,370,463	+	flrB	SO3231	0.27	-0.6
3,370,471	-	flrB	SO3231	0.28	+1.2
3,370,471	-	flrB	SO3231	0.28	-0.4
3,370,471	-	flrB	SO3231	0.28	-0.7
3,370,471	-	flrB	SO3231	0.28	+0.3
3,370,478	-	flrB	SO3231	0.29	-0.0
3,370,523	+	flrB	SO3231	0.33	-0.2
3,370,524	+	flrB	SO3231	0.33	-0.4
3,370,548	-	flrB	SO3231	0.35	+0.1
3,370,556	+	flrB	SO3231	0.36	+0.6
3,370,566	+	flrB	SO3231	0.37	-0.3
3,370,751	+	flrB	SO3231	0.54	+1.1
3,370,774	+	flrB	SO3231	0.56	-0.6
3,370,774	+	flrB	SO3231	0.56	-0.4
3,370,776	+	flrB	SO3231	0.56	-0.7
3,370,782	-	flrB	SO3231	0.57	+0.6
3,370,784	-	flrB	SO3231	0.57	-1.3
3,370,784	-	flrB	SO3231	0.57	+0.1
3,371,448	+				-0.5
3,371,456	+				-0.5
3,371,456	+				+0.6
3,371,490	-				-1.3
3,371,503	+	flrA	SO3232	0.10	-1.0
3,371,612	+	flrA	SO3232	0.18	-0.7
3,371,620	-	flrA	SO3232	0.18	+0.3
3,371,625	-	flrA	SO3232	0.19	-1.3
3,371,632	-	flrA	SO3232	0.19	+0.0
3,371,789	+	flrA	SO3232	0.30	-0.2
3,371,944	-	flrA	SO3232	0.41	-2.4
3,372,295	+	flrA	SO3232	0.65	-0.2
3,372,303	-	flrA	SO3232	0.66	-1.0
3,372,320	-	flrA	SO3232	0.67	-0.7
3,372,320	-	flrA	SO3232	0.67	-1.5
3,372,320	-	flrA	SO3232	0.67	-1.2
3,372,320	-	flrA	SO3232	0.67	-2.2
3,372,431	-	flrA	SO3232	0.75	-0.6
3,372,476	-	flrA	SO3232	0.78	-1.6
3,372,524	+	flrA	SO3232	0.81	+0.1
3,372,586	-	flrA	SO3232	0.86	-1.1
3,372,620	+	flrA	SO3232	0.88	-2.0
3,372,744	-				-0.9
3,372,788	+				-1.2
3,372,884	-				+1.1
3,372,901	-				-0.9
3,372,917	+				+0.0
3,373,116	+				+1.4
3,373,116	+				-1.1
3,373,116	+				-1.0
3,373,136	+	fliS	SO3233	0.12	-1.2
3,373,145	-	fliS	SO3233	0.14	-0.6
3,373,156	-	fliS	SO3233	0.17	-0.5
3,373,361	+	fliS	SO3233	0.67	-1.4
3,373,370	+	fliS	SO3233	0.69	-0.7
3,373,377	+	fliS	SO3233	0.71	-1.1
3,373,377	+	fliS	SO3233	0.71	-1.0
3,373,385	-	fliS	SO3233	0.73	-0.9
3,373,385	-	fliS	SO3233	0.73	-0.8
3,373,385	-	fliS	SO3233	0.73	-0.9
3,373,389	+	fliS	SO3233	0.74	-1.2
3,373,389	+	fliS	SO3233	0.74	-0.8
3,373,397	-	fliS	SO3233	0.76	-2.1
3,373,400	-	fliS	SO3233	0.76	-0.5
3,373,426	-	fliS	SO3233	0.83	-1.6
3,373,500	+				-0.8
3,373,500	-				+0.8
3,373,539	-		SO3234	0.11	+0.0
3,373,624	+		SO3234	0.38	-1.6
3,373,684	-		SO3234	0.56	-2.1
3,373,711	-		SO3234	0.65	+0.5
3,373,711	-		SO3234	0.65	-1.5
3,373,733	+		SO3234	0.72	-1.9
3,373,749	+		SO3234	0.77	-0.8
3,373,775	+		SO3234	0.85	-1.3
3,373,775	+		SO3234	0.85	-2.4
3,373,783	-		SO3234	0.87	-1.1