Strain Fitness in Shewanella oneidensis MR-1 around SO3229

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,367,622	+	fliF	SO3228	0.63	-1.5
3,367,629	+	fliF	SO3228	0.64	-0.4
3,367,637	-	fliF	SO3228	0.64	-0.7
3,367,682	-	fliF	SO3228	0.67	-3.8
3,367,712	+	fliF	SO3228	0.69	-1.2
3,367,846	-	fliF	SO3228	0.77	-1.8
3,367,856	-	fliF	SO3228	0.77	-2.8
3,367,879	-	fliF	SO3228	0.79	-0.7
3,367,923	+	fliF	SO3228	0.81	-1.5
3,367,931	-	fliF	SO3228	0.82	-1.2
3,367,944	-	fliF	SO3228	0.83	-0.2
3,368,039	-	fliF	SO3228	0.88	-1.5
3,368,081	+				-2.0
3,368,207	-				-1.7
3,368,479	+	fliE	SO3229	0.52	+0.8
3,368,487	-	fliE	SO3229	0.54	-3.3
3,368,651	+				-2.2
3,368,952	-				-1.7
3,368,979	+	flrC	SO3230	0.11	-0.2
3,368,979	+	flrC	SO3230	0.11	-0.8
3,369,028	+	flrC	SO3230	0.14	+0.1
3,369,083	-	flrC	SO3230	0.19	-0.4
3,369,093	-	flrC	SO3230	0.19	-0.7
3,369,123	-	flrC	SO3230	0.22	-1.8
3,369,128	-	flrC	SO3230	0.22	-0.2
3,369,155	-	flrC	SO3230	0.24	+0.9
3,369,250	+	flrC	SO3230	0.31	+0.7
3,369,258	-	flrC	SO3230	0.32	-0.2
3,369,258	-	flrC	SO3230	0.32	+1.6
3,369,260	-	flrC	SO3230	0.32	-1.1