Strain Fitness in Shewanella oneidensis MR-1 around SO3226

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,363,608	+	fliI	SO3225	0.24	-1.1
3,363,613	-	fliI	SO3225	0.24	-1.3
3,363,690	-	fliI	SO3225	0.30	-0.9
3,363,707	+	fliI	SO3225	0.31	-0.5
3,363,707	+	fliI	SO3225	0.31	-1.1
3,363,935	-	fliI	SO3225	0.48	+0.0
3,363,935	-	fliI	SO3225	0.48	-1.3
3,364,071	-	fliI	SO3225	0.59	-2.0
3,364,096	+	fliI	SO3225	0.60	-1.3
3,364,235	+	fliI	SO3225	0.71	-0.6
3,364,314	-	fliI	SO3225	0.77	-1.6
3,364,553	-				-1.4
3,364,553	-				-1.0
3,365,035	-	fliH	SO3226	0.46	-0.6
3,365,071	-	fliH	SO3226	0.50	-1.5
3,365,076	+	fliH	SO3226	0.51	-1.3
3,365,084	-	fliH	SO3226	0.52	-1.1
3,365,084	-	fliH	SO3226	0.52	+0.5
3,365,113	-	fliH	SO3226	0.55	-1.2
3,365,204	-	fliH	SO3226	0.64	-0.5
3,365,239	+	fliH	SO3226	0.68	-0.8
3,365,246	+	fliH	SO3226	0.69	-1.1
3,365,249	-	fliH	SO3226	0.69	-2.6
3,365,264	-	fliH	SO3226	0.70	-0.6
3,365,292	+	fliH	SO3226	0.73	-0.3
3,365,299	-	fliH	SO3226	0.74	-1.9
3,365,300	-	fliH	SO3226	0.74	-0.8
3,365,417	-	fliH	SO3226	0.87	-0.4
3,365,417	-	fliH	SO3226	0.87	-1.2
3,365,583	+				-0.8
3,365,644	-	fliG	SO3227	0.11	-1.0
3,365,744	-	fliG	SO3227	0.20	-0.4
3,365,777	-	fliG	SO3227	0.23	-2.9
3,365,783	+	fliG	SO3227	0.24	-2.1
3,365,791	-	fliG	SO3227	0.25	-1.5
3,365,926	-	fliG	SO3227	0.38	-1.0
3,365,972	+	fliG	SO3227	0.42	-0.1
3,365,980	-	fliG	SO3227	0.43	-2.0
3,366,027	+	fliG	SO3227	0.47	-1.4
3,366,035	-	fliG	SO3227	0.48	-1.4
3,366,266	+	fliG	SO3227	0.70	-0.6
3,366,274	-	fliG	SO3227	0.71	-1.6
3,366,292	-	fliG	SO3227	0.73	-1.9
3,366,393	-	fliG	SO3227	0.82	-1.2
3,366,430	-	fliG	SO3227	0.86	+1.8
3,366,432	+	fliG	SO3227	0.86	-0.1
3,366,439	+	fliG	SO3227	0.87	-0.9
3,366,475	+				-1.3