Strain Fitness in Shewanella oneidensis MR-1 around SO3225

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,362,496	-	fliK	SO3223	0.88	-1.1
3,362,695	+				-1.3
3,362,980	-	fliJ	SO3224	0.33	-0.9
3,363,084	+	fliJ	SO3224	0.57	-1.0
3,363,092	+	fliJ	SO3224	0.58	-1.1
3,363,100	-	fliJ	SO3224	0.60	-1.0
3,363,100	-	fliJ	SO3224	0.60	-0.2
3,363,338	+				-1.9
3,363,502	+	fliI	SO3225	0.16	-2.0
3,363,502	+	fliI	SO3225	0.16	-1.3
3,363,510	-	fliI	SO3225	0.17	-0.5
3,363,510	-	fliI	SO3225	0.17	-2.5
3,363,510	-	fliI	SO3225	0.17	-2.4
3,363,510	-	fliI	SO3225	0.17	+0.8
3,363,608	+	fliI	SO3225	0.24	-1.1
3,363,613	-	fliI	SO3225	0.24	-1.3
3,363,690	-	fliI	SO3225	0.30	-0.9
3,363,707	+	fliI	SO3225	0.31	-0.5
3,363,707	+	fliI	SO3225	0.31	-1.1
3,363,935	-	fliI	SO3225	0.48	+0.0
3,363,935	-	fliI	SO3225	0.48	-1.3
3,364,071	-	fliI	SO3225	0.59	-2.0
3,364,096	+	fliI	SO3225	0.60	-1.3
3,364,235	+	fliI	SO3225	0.71	-0.6
3,364,314	-	fliI	SO3225	0.77	-1.6
3,364,553	-				-1.4
3,364,553	-				-1.0
3,365,035	-	fliH	SO3226	0.46	-0.6
3,365,071	-	fliH	SO3226	0.50	-1.5
3,365,076	+	fliH	SO3226	0.51	-1.3
3,365,084	-	fliH	SO3226	0.52	-1.1
3,365,084	-	fliH	SO3226	0.52	+0.5
3,365,113	-	fliH	SO3226	0.55	-1.2
3,365,204	-	fliH	SO3226	0.64	-0.5
3,365,239	+	fliH	SO3226	0.68	-0.8
3,365,246	+	fliH	SO3226	0.69	-1.1
3,365,249	-	fliH	SO3226	0.69	-2.6
3,365,264	-	fliH	SO3226	0.70	-0.6
3,365,292	+	fliH	SO3226	0.73	-0.3
3,365,299	-	fliH	SO3226	0.74	-1.9
3,365,300	-	fliH	SO3226	0.74	-0.8
3,365,417	-	fliH	SO3226	0.87	-0.4
3,365,417	-	fliH	SO3226	0.87	-1.2
3,365,583	+				-0.8