Strain Fitness in Shewanella oneidensis MR-1 around SO3218

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,356,870	-	fliR	SO3216	0.13	-1.2
3,357,018	-	fliR	SO3216	0.31	-1.7
3,357,069	+	fliR	SO3216	0.38	-0.3
3,357,072	-	fliR	SO3216	0.38	-0.4
3,357,310	+	fliR	SO3216	0.68	-0.9
3,357,405	-	fliR	SO3216	0.80	-1.6
3,357,433	+	fliR	SO3216	0.83	-0.8
3,357,517	+				-1.8
3,357,524	-				-1.4
3,357,623	+	fliQ	SO3217	0.20	-0.8
3,357,623	+	fliQ	SO3217	0.20	-1.8
3,357,670	+	fliQ	SO3217	0.37	-2.2
3,357,697	-	fliQ	SO3217	0.47	-0.8
3,357,697	-	fliQ	SO3217	0.47	-0.7
3,357,744	+	fliQ	SO3217	0.65	-0.6
3,357,758	+	fliQ	SO3217	0.70	-0.5
3,357,826	+				-1.5
3,357,858	+				-0.4
3,357,861	-				-0.5
3,357,953	-	fliP	SO3218	0.13	-0.8
3,357,960	+	fliP	SO3218	0.14	-1.4
3,357,970	-	fliP	SO3218	0.15	-1.8
3,358,088	-	fliP	SO3218	0.31	-1.7
3,358,152	+	fliP	SO3218	0.40	-2.6
3,358,196	+	fliP	SO3218	0.46	-0.8
3,358,204	-	fliP	SO3218	0.47	-1.6
3,358,249	-	fliP	SO3218	0.53	-1.0
3,358,319	-	fliP	SO3218	0.62	-0.2
3,358,321	+	fliP	SO3218	0.62	-0.3
3,358,436	-	fliP	SO3218	0.78	-0.9
3,358,485	-	fliP	SO3218	0.85	-1.2
3,358,565	+				-1.7
3,358,594	-				-0.4
3,358,619	+				-0.7
3,358,757	+	fliO	SO3219	0.39	-1.4
3,358,757	+	fliO	SO3219	0.39	-1.2
3,358,861	+	fliO	SO3219	0.64	-0.2
3,358,962	+	fliO	SO3219	0.89	-1.9
3,359,028	-				-1.9
3,359,074	+				-1.7
3,359,082	-	fliN	SO3220	0.11	-0.3
3,359,157	+	fliN	SO3220	0.31	-0.8
3,359,178	+	fliN	SO3220	0.37	-1.2
3,359,180	+	fliN	SO3220	0.37	-1.7
3,359,299	-	fliN	SO3220	0.69	-0.2
3,359,300	+	fliN	SO3220	0.69	-2.5
3,359,327	+	fliN	SO3220	0.76	-0.6
3,359,336	+	fliN	SO3220	0.79	-1.4
3,359,401	-				-0.2
3,359,408	+				-0.5
3,359,518	+				-0.2