Strain Fitness in Shewanella oneidensis MR-1 around SO3215

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,354,620	-	flhA	SO3213	0.71	-2.4
3,354,684	-	flhA	SO3213	0.74	+0.6
3,354,695	+	flhA	SO3213	0.74	-0.4
3,354,884	-	flhA	SO3213	0.83	-0.8
3,354,907	-	flhA	SO3213	0.84	-1.2
3,354,949	+	flhA	SO3213	0.86	-1.0
3,354,969	+	flhA	SO3213	0.87	-0.9
3,355,012	-	flhA	SO3213	0.89	-1.6
3,355,036	-				-1.3
3,355,076	-				-0.4
3,355,076	-				-0.8
3,355,209	-				+0.8
3,355,211	+				-1.6
3,355,218	-				-0.6
3,355,333	-				+0.2
3,355,336	-				-0.6
3,355,610	+				+0.8
3,355,610	+				-0.0
3,355,641	+				-0.9
3,355,661	+				-0.3
3,355,740	-	flhB	SO3215	0.11	-0.8
3,355,761	+	flhB	SO3215	0.13	-2.1
3,355,785	+	flhB	SO3215	0.15	-1.1
3,355,897	-	flhB	SO3215	0.25	-0.8
3,356,030	+	flhB	SO3215	0.37	-0.6
3,356,030	+	flhB	SO3215	0.37	-0.3
3,356,038	-	flhB	SO3215	0.38	-1.2
3,356,088	+	flhB	SO3215	0.42	-1.3
3,356,142	-	flhB	SO3215	0.47	-0.8
3,356,142	-	flhB	SO3215	0.47	-2.2
3,356,259	+	flhB	SO3215	0.57	+0.4
3,356,292	-	flhB	SO3215	0.60	-0.6
3,356,475	+	flhB	SO3215	0.76	-0.2
3,356,599	-	flhB	SO3215	0.87	-0.3
3,356,610	-	flhB	SO3215	0.88	-0.9
3,356,631	-				-1.5
3,356,692	+				-1.2
3,356,706	+				-1.6
3,356,748	+				-0.4
3,356,797	-				-0.6
3,356,828	-				-0.8
3,356,839	-				-1.4
3,356,839	-				-0.8
3,356,870	-	fliR	SO3216	0.13	-1.2
3,357,018	-	fliR	SO3216	0.31	-1.7
3,357,069	+	fliR	SO3216	0.38	-0.3
3,357,072	-	fliR	SO3216	0.38	-0.4
3,357,310	+	fliR	SO3216	0.68	-0.9
3,357,405	-	fliR	SO3216	0.80	-1.6
3,357,433	+	fliR	SO3216	0.83	-0.8
3,357,517	+				-1.8
3,357,524	-				-1.4
3,357,623	+	fliQ	SO3217	0.20	-0.8
3,357,623	+	fliQ	SO3217	0.20	-1.8
3,357,670	+	fliQ	SO3217	0.37	-2.2
3,357,697	-	fliQ	SO3217	0.47	-0.8
3,357,697	-	fliQ	SO3217	0.47	-0.7