Strain Fitness in Shewanella oneidensis MR-1 around SO3213

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,352,260	+	flhF	SO3212	0.37	+1.2
3,352,310	-	flhF	SO3212	0.41	+0.2
3,352,383	+	flhF	SO3212	0.46	-1.1
3,352,621	-	flhF	SO3212	0.63	+1.5
3,352,690	+	flhF	SO3212	0.68	-0.9
3,352,743	-	flhF	SO3212	0.72	-1.0
3,352,896	+	flhF	SO3212	0.83	-0.4
3,353,048	+				-1.2
3,353,056	-				-0.3
3,353,143	-				-0.5
3,353,234	+				-0.9
3,353,262	-				-0.9
3,353,506	+	flhA	SO3213	0.18	-0.5
3,353,689	-	flhA	SO3213	0.26	-0.9
3,353,788	+	flhA	SO3213	0.31	-1.4
3,353,795	+	flhA	SO3213	0.31	-2.0
3,353,906	-	flhA	SO3213	0.37	-0.5
3,353,986	+	flhA	SO3213	0.41	-1.4
3,354,057	+	flhA	SO3213	0.44	-1.2
3,354,057	+	flhA	SO3213	0.44	-1.7
3,354,065	-	flhA	SO3213	0.44	-0.1
3,354,301	-	flhA	SO3213	0.56	-0.6
3,354,317	+	flhA	SO3213	0.56	-0.8
3,354,406	-	flhA	SO3213	0.61	-1.5
3,354,476	-	flhA	SO3213	0.64	-0.8
3,354,503	-	flhA	SO3213	0.65	-0.8
3,354,544	-	flhA	SO3213	0.67	-1.5
3,354,545	+	flhA	SO3213	0.67	-1.0
3,354,620	-	flhA	SO3213	0.71	-2.4
3,354,684	-	flhA	SO3213	0.74	+0.6
3,354,695	+	flhA	SO3213	0.74	-0.4
3,354,884	-	flhA	SO3213	0.83	-0.8
3,354,907	-	flhA	SO3213	0.84	-1.2
3,354,949	+	flhA	SO3213	0.86	-1.0
3,354,969	+	flhA	SO3213	0.87	-0.9
3,355,012	-	flhA	SO3213	0.89	-1.6
3,355,036	-				-1.3
3,355,076	-				-0.4
3,355,076	-				-0.8
3,355,209	-				+0.8
3,355,211	+				-1.6
3,355,218	-				-0.6
3,355,333	-				+0.2
3,355,336	-				-0.6
3,355,610	+				+0.8
3,355,610	+				-0.0
3,355,641	+				-0.9
3,355,661	+				-0.3
3,355,740	-	flhB	SO3215	0.11	-0.8
3,355,761	+	flhB	SO3215	0.13	-2.1
3,355,785	+	flhB	SO3215	0.15	-1.1
3,355,897	-	flhB	SO3215	0.25	-0.8
3,356,030	+	flhB	SO3215	0.37	-0.6
3,356,030	+	flhB	SO3215	0.37	-0.3
3,356,038	-	flhB	SO3215	0.38	-1.2
3,356,088	+	flhB	SO3215	0.42	-1.3
3,356,142	-	flhB	SO3215	0.47	-0.8
3,356,142	-	flhB	SO3215	0.47	-2.2