Strain Fitness in Shewanella oneidensis MR-1 around SO3210

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,349,302	+	cheZ	SO3208	0.45	-0.7
3,349,656	-				+0.6
3,349,666	-				+0.7
3,349,689	+				-0.1
3,349,712	+				+1.4
3,349,713	-				+1.5
3,349,720	-				+0.4
3,349,767	-	cheY-3	SO3209	0.11	+1.7
3,349,789	+	cheY-3	SO3209	0.17	-1.5
3,349,899	+	cheY-3	SO3209	0.46	+0.3
3,350,007	+	cheY-3	SO3209	0.74	-0.1
3,350,116	-				+0.7
3,350,191	-				-2.4
3,350,534	-	fliA	SO3210	0.53	-1.5
3,350,671	-	fliA	SO3210	0.72	-0.8
3,350,686	-	fliA	SO3210	0.74	-2.3
3,350,731	-	fliA	SO3210	0.81	-1.4
3,350,732	+	fliA	SO3210	0.81	-2.0
3,350,845	+				+0.0
3,350,853	-				+1.0
3,350,853	-				-2.1
3,350,853	-				-1.1
3,351,311	-	flhG	SO3211	0.53	-0.3
3,351,457	-	flhG	SO3211	0.70	-1.4
3,351,511	-	flhG	SO3211	0.76	-1.5
3,351,571	-	flhG	SO3211	0.83	-1.4
3,351,591	+	flhG	SO3211	0.86	-2.4
3,351,638	+				-0.2
3,351,646	-				-2.6
3,351,770	-				+0.3
3,351,770	-				+1.2