Strain Fitness in Shewanella oneidensis MR-1 around SO3002

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,118,241	+				+0.7
3,118,440	-		SO3000	0.33	+0.0
3,118,455	+		SO3000	0.35	+0.5
3,118,576	-		SO3000	0.56	+1.3
3,118,667	-		SO3000	0.71	-1.6
3,118,738	+		SO3000	0.84	-1.1
3,118,738	+		SO3000	0.84	+0.1
3,118,738	+		SO3000	0.84	+0.2
3,118,738	+		SO3000	0.84	+0.3
3,118,739	+		SO3000	0.84	+1.1
3,118,746	-		SO3000	0.85	-0.4
3,118,747	-		SO3000	0.85	-0.4
3,118,773	-		SO3000	0.89	-2.4
3,118,792	+				+0.8
3,118,810	+				-1.0
3,118,880	-		SO3001	0.13	+2.0
3,118,963	+		SO3001	0.34	+1.6
3,118,971	-		SO3001	0.36	+0.6
3,118,975	+		SO3001	0.37	+0.4
3,118,983	+		SO3001	0.39	+0.9
3,118,996	+		SO3001	0.42	+1.3
3,119,132	-		SO3001	0.77	+1.5
3,119,141	+		SO3001	0.79	+1.9
3,119,170	+		SO3001	0.87	+0.6
3,119,201	+				+0.2
3,119,463	-		SO3002	0.37	+1.5
3,119,611	+		SO3002	0.59	+0.2
3,119,672	+		SO3002	0.68	+1.2
3,119,672	+		SO3002	0.68	+1.1
3,119,682	+		SO3002	0.69	+0.5
3,119,762	-		SO3002	0.81	+1.1
3,120,042	+		SO3003	0.45	-0.0
3,120,069	+		SO3003	0.53	+0.4
3,120,077	-		SO3003	0.55	+0.6
3,120,242	-				+0.3
3,120,328	-		SO3004	0.10	+0.4
3,120,411	+		SO3004	0.19	+0.3
3,120,419	-		SO3004	0.20	+0.4
3,120,421	+		SO3004	0.20	+0.7
3,120,456	+		SO3004	0.23	+0.1
3,120,490	+		SO3004	0.27	+0.6
3,120,524	+		SO3004	0.31	+0.0
3,120,555	+		SO3004	0.34	+0.6
3,120,563	-		SO3004	0.35	-1.6
3,120,563	-		SO3004	0.35	+0.6
3,120,671	+		SO3004	0.46	+0.1
3,120,671	+		SO3004	0.46	+0.5
3,120,679	-		SO3004	0.47	+0.6
3,120,679	-		SO3004	0.47	+1.1
3,120,679	-		SO3004	0.47	+0.9
3,120,690	+		SO3004	0.48	+0.8
3,120,698	-		SO3004	0.49	-0.1
3,120,738	-		SO3004	0.53	-0.2
3,120,818	+		SO3004	0.61	+0.2
3,120,885	-		SO3004	0.68	+0.6