Strain Fitness in Shewanella oneidensis MR-1 around SO2948

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,084,853	-		SO2946	0.19	+1.1
3,084,853	-		SO2946	0.19	+0.9
3,084,857	+		SO2946	0.20	+1.2
3,084,891	-		SO2946	0.24	+1.3
3,084,902	-		SO2946	0.26	+0.1
3,084,902	-		SO2946	0.26	+0.7
3,084,952	-		SO2946	0.32	-1.5
3,084,969	-		SO2946	0.34	+0.7
3,085,094	+		SO2946	0.50	+1.1
3,085,094	+		SO2946	0.50	+0.6
3,085,096	+		SO2946	0.50	+0.3
3,085,154	-		SO2946	0.58	+0.4
3,085,191	+		SO2946	0.62	-1.0
3,085,221	-		SO2946	0.66	+1.6
3,085,234	-		SO2946	0.68	+1.1
3,085,305	+		SO2946	0.77	+0.6
3,085,305	+		SO2946	0.77	-0.0
3,085,305	+		SO2946	0.77	+1.1
3,085,313	-		SO2946	0.78	+0.1
3,085,313	-		SO2946	0.78	+0.7
3,085,402	+		SO2946	0.89	+0.4
3,085,402	+		SO2946	0.89	+0.9
3,085,402	-		SO2946	0.89	+0.6
3,085,445	+				+0.5
3,085,501	+				+0.2
3,085,561	+		SO2947	0.26	+0.1
3,085,569	-		SO2947	0.29	+0.6
3,085,596	-		SO2947	0.38	+1.4
3,085,791	-				+2.2
3,085,918	-		SO2948	0.10	+1.4
3,085,920	-		SO2948	0.10	+0.8
3,085,979	-		SO2948	0.19	+0.5
3,086,080	+		SO2948	0.33	-0.1
3,086,192	+		SO2948	0.48	+2.1
3,086,209	+		SO2948	0.51	+0.4
3,086,219	+		SO2948	0.52	-0.2
3,086,227	-		SO2948	0.53	+0.1
3,086,292	-		SO2948	0.62	+0.4
3,086,372	+		SO2948	0.74	-0.4
3,086,615	+				+0.3
3,086,638	-				-0.4
3,086,647	+				+1.7
3,086,706	+		SO2949	0.13	-0.0
3,086,709	-		SO2949	0.13	-0.7
3,086,715	-		SO2949	0.14	-0.1
3,086,720	-		SO2949	0.15	-0.3
3,086,810	-		SO2949	0.27	+1.4
3,086,876	-		SO2949	0.37	+0.4
3,086,893	-		SO2949	0.39	-0.0
3,087,008	+		SO2949	0.55	+0.5
3,087,019	+		SO2949	0.56	+0.2
3,087,128	-		SO2949	0.71	-0.4
3,087,128	-		SO2949	0.71	+0.7
3,087,138	+		SO2949	0.73	+0.4
3,087,149	+		SO2949	0.74	-0.2
3,087,162	-		SO2949	0.76	+1.5
3,087,306	+				+0.6
3,087,306	+				+1.1
3,087,306	+				-0.1
3,087,306	+				-0.0
3,087,306	+				+0.9
3,087,314	-				+0.8
3,087,314	-				+0.3
3,087,376	+				+0.8
3,087,376	+				+0.8
3,087,383	+				+0.4
3,087,384	-				+0.6
3,087,384	-				+0.6
3,087,384	-				+0.1
3,087,384	-				+0.0
3,087,477	-		SO2950	0.22	+0.3
3,087,477	-		SO2950	0.22	+0.7