Strain Fitness in Shewanella oneidensis MR-1 around SO2896

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2894 and pdxH are separated by 26 nucleotidespdxH and ligA are separated by 181 nucleotidesligA and zipA are separated by 98 nucleotides SO2894: SO2894 - YaiI/YqxD family protein (NCBI ptt file), at 3,016,449 to 3,016,904 SO2894 SO2895: pdxH - pyridoxamine 5'-phosphate oxidase (NCBI ptt file), at 3,016,931 to 3,017,569 pdxH SO2896: ligA - DNA ligase, NAD-dependent (NCBI ptt file), at 3,017,751 to 3,019,820 ligA SO2897: zipA - cell division protein ZipA (NCBI ptt file), at 3,019,919 to 3,020,953 zipA Position (kb) 3017 3018 3019 3020Strain fitness (log2 ratio) -1 0 1at 3016.775 kb on - strand, within SO2894at 3019.899 kb on - strandat 3019.925 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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3,016,775 - SO2894 0.71 +0.0
3,019,899 - -0.5
3,019,925 - -0.4

Or see this region's nucleotide sequence