Strain Fitness in Shewanella oneidensis MR-1 around SO2855

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
2,977,873	+		SO2853	0.87	+0.4
2,977,873	+		SO2853	0.87	-1.0
2,977,881	-		SO2853	0.88	+0.7
2,977,913	-				-1.3
2,977,914	+				-0.1
2,977,932	-				+1.2
2,978,028	-				-0.1
2,978,076	+				-1.4
2,978,076	+				+0.5
2,978,084	-				+0.6
2,978,140	-		SO2854	0.16	-0.6
2,978,168	+		SO2854	0.20	+0.3
2,978,347	+		SO2854	0.50	+0.8
2,978,355	-		SO2854	0.52	-1.4
2,978,357	+		SO2854	0.52	-0.7
2,978,357	+		SO2854	0.52	-0.3
2,978,357	+		SO2854	0.52	-1.1
2,978,357	+		SO2854	0.52	+1.0
2,978,357	+		SO2854	0.52	-0.1
2,978,365	-		SO2854	0.53	-2.3
2,978,365	-		SO2854	0.53	+0.8
2,978,365	-		SO2854	0.53	-0.4
2,978,365	-		SO2854	0.53	-0.2
2,978,438	+		SO2854	0.65	+0.3
2,978,483	-		SO2854	0.73	-0.8
2,978,512	-		SO2854	0.78	-0.5
2,978,783	-				+0.5
2,978,850	-				-0.3
2,978,927	+		SO2855	0.13	+0.3
2,978,940	-		SO2855	0.16	+0.7
2,978,944	+		SO2855	0.16	-0.3
2,978,978	+		SO2855	0.23	-0.6
2,978,986	-		SO2855	0.24	+0.7
2,979,224	+		SO2855	0.68	-0.4
2,979,232	-		SO2855	0.69	-1.1
2,979,259	+		SO2855	0.74	-0.1
2,979,264	+		SO2855	0.75	+0.5
2,979,336	+		SO2855	0.88	-0.9
2,979,457	-				+0.2
2,979,527	-				-0.5
2,979,584	+				-0.3
2,979,584	+				+1.0
2,979,584	+				+1.2
2,979,760	-		SO2856	0.12	-1.0
2,979,819	+		SO2856	0.15	+0.4
2,979,819	+		SO2856	0.15	+0.0
2,979,827	-		SO2856	0.16	-1.4
2,979,877	+		SO2856	0.19	+2.6
2,980,047	-		SO2856	0.28	+0.6
2,980,141	-		SO2856	0.33	-1.2
2,980,164	-		SO2856	0.34	+0.5
2,980,216	-		SO2856	0.37	-1.4
2,980,220	+		SO2856	0.37	+0.1
2,980,235	-		SO2856	0.38	+0.7
2,980,248	-		SO2856	0.38	-0.1
2,980,293	-		SO2856	0.41	-0.5
2,980,369	+		SO2856	0.45	+2.2
2,980,377	-		SO2856	0.45	+0.2