Strain Fitness in Shewanella oneidensis MR-1 around SO2790

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
2,911,283	-				+2.8
2,911,302	-		SO2789	0.11	-0.3
2,911,344	-		SO2789	0.16	-1.1
2,911,349	-		SO2789	0.16	+0.1
2,911,565	+		SO2789	0.43	-0.7
2,911,565	+		SO2789	0.43	+0.6
2,911,584	-		SO2789	0.46	+0.9
2,911,764	+		SO2789	0.68	-0.5
2,911,831	+		SO2789	0.76	-0.2
2,911,874	-		SO2789	0.82	+1.3
2,911,990	-				+0.1
2,912,152	-				+0.7
2,912,266	+				-1.7
2,912,266	+				-1.6
2,912,274	-				-2.2
2,912,274	-				-2.4
2,912,334	+				-1.6
2,912,447	+	sbcB	SO2790	0.18	-1.3
2,912,492	+	sbcB	SO2790	0.21	+0.6
2,912,492	+	sbcB	SO2790	0.21	-1.6
2,912,492	+	sbcB	SO2790	0.21	-0.4
2,912,492	+	sbcB	SO2790	0.21	-2.3
2,912,492	+	sbcB	SO2790	0.21	-1.3
2,912,500	-	sbcB	SO2790	0.21	-0.2
2,912,556	+	sbcB	SO2790	0.25	-0.9
2,912,687	-	sbcB	SO2790	0.35	-2.4
2,912,693	+	sbcB	SO2790	0.35	-0.6
2,912,711	+	sbcB	SO2790	0.36	-1.4
2,912,719	-	sbcB	SO2790	0.37	-1.0
2,912,743	+	sbcB	SO2790	0.39	-0.1
2,912,758	-	sbcB	SO2790	0.40	-0.8
2,913,025	+	sbcB	SO2790	0.59	-1.4
2,913,051	+	sbcB	SO2790	0.60	-0.9
2,913,059	-	sbcB	SO2790	0.61	-1.9
2,913,160	+	sbcB	SO2790	0.68	-1.2
2,913,210	-	sbcB	SO2790	0.72	+1.2
2,913,493	+				-1.8
2,913,596	-				-1.6
2,913,612	+				+0.2
2,913,630	-				+0.6
2,913,814	-				-0.0
2,913,934	-	cdd	SO2791	0.17	+0.0
2,913,934	-	cdd	SO2791	0.17	+0.6
2,914,046	+	cdd	SO2791	0.29	+0.3
2,914,066	+	cdd	SO2791	0.32	-1.0
2,914,074	-	cdd	SO2791	0.33	-0.5
2,914,124	-	cdd	SO2791	0.38	+0.4
2,914,202	+	cdd	SO2791	0.47	-1.6
2,914,266	-	cdd	SO2791	0.54	-0.6
2,914,285	+	cdd	SO2791	0.56	-0.6
2,914,349	+	cdd	SO2791	0.63	+0.2
2,914,389	-	cdd	SO2791	0.68	+0.6
2,914,389	-	cdd	SO2791	0.68	-0.5
2,914,389	-	cdd	SO2791	0.68	+0.8
2,914,389	-	cdd	SO2791	0.68	-0.1
2,914,389	-	cdd	SO2791	0.68	+0.3
2,914,402	+	cdd	SO2791	0.69	-1.1
2,914,402	+	cdd	SO2791	0.69	+0.4
2,914,410	-	cdd	SO2791	0.70	+0.5
2,914,410	-	cdd	SO2791	0.70	-0.4
2,914,417	-	cdd	SO2791	0.71	+0.0
2,914,572	-	cdd	SO2791	0.88	-1.0
2,914,593	-				+1.0