Strain Fitness in Shewanella oneidensis MR-1 around SO2607

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
2,743,299	+		SO2606	0.68	+0.5
2,743,370	+		SO2606	0.71	-1.0
2,743,389	+		SO2606	0.72	+0.8
2,743,483	+		SO2606	0.75	+0.0
2,743,495	+		SO2606	0.76	-0.2
2,743,495	+		SO2606	0.76	-2.0
2,743,495	+		SO2606	0.76	-0.5
2,743,663	-		SO2606	0.82	-0.6
2,743,710	+		SO2606	0.84	+1.9
2,743,743	+		SO2606	0.85	-2.9
2,743,800	+		SO2606	0.88	+0.2
2,743,800	+		SO2606	0.88	-0.3
2,743,800	+		SO2606	0.88	-0.3
2,743,800	+		SO2606	0.88	-0.0
2,743,800	+		SO2606	0.88	-0.1
2,743,800	+		SO2606	0.88	-1.8
2,743,808	-		SO2606	0.88	-1.6
2,743,808	-		SO2606	0.88	+1.2
2,743,808	-		SO2606	0.88	+0.5
2,743,808	-		SO2606	0.88	-0.6
2,743,808	-		SO2606	0.88	-0.2
2,743,808	-		SO2606	0.88	-0.7
2,743,808	-		SO2606	0.88	-0.3
2,743,912	+				+0.5
2,743,912	+				+1.3
2,743,912	+				+0.2
2,743,920	-				+0.0
2,744,051	+				-0.2
2,744,254	+				+0.2
2,744,254	+				+0.5
2,744,254	+				+0.4
2,744,254	+				+0.5
2,744,254	+				-0.2
2,744,254	+				-1.0
2,744,262	-				+0.5
2,744,262	-				+0.0
2,744,262	-				-0.2
2,744,493	+		SO2607	0.19	+1.1
2,744,518	-		SO2607	0.21	-0.8
2,744,584	+		SO2607	0.26	-0.1
2,744,688	+		SO2607	0.34	-0.3
2,744,782	+		SO2607	0.42	-0.9
2,744,804	-		SO2607	0.44	-0.9
2,744,878	+		SO2607	0.50	+0.1
2,744,899	-		SO2607	0.52	+0.8
2,744,899	-		SO2607	0.52	-0.3
2,745,014	-		SO2607	0.61	-0.3
2,745,014	-		SO2607	0.61	-1.2
2,745,108	+		SO2607	0.69	-0.5
2,745,310	+		SO2607	0.85	+0.1
2,745,310	+		SO2607	0.85	-0.2
2,745,354	-		SO2607	0.89	-1.9
2,745,651	+				-0.0
2,745,660	-				+0.2
2,745,662	+				-0.0
2,745,662	+				-1.2
2,745,662	+				-0.6
2,745,739	-				-0.1
2,745,922	+		SO2609	0.17	-1.1
2,745,938	+		SO2609	0.18	+1.0
2,746,025	-		SO2609	0.25	-0.2
2,746,167	+		SO2609	0.35	+0.8
2,746,167	+		SO2609	0.35	+1.1
2,746,266	-		SO2609	0.41	+0.2
2,746,330	+		SO2609	0.46	-0.9