Strain Fitness in Shewanella oneidensis MR-1 around SO2148

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecD and recB are separated by 29 nucleotidesrecB and recC are separated by 17 nucleotides SO2147: recD - exodeoxyribonuclease V, alpha subunit (NCBI ptt file), at 2,253,511 to 2,255,649 recD SO2148: recB - exodeoxyribonuclease V, beta subunit (NCBI ptt file), at 2,255,679 to 2,259,458 recB SO2149: recC - exodeoxyribonuclease V, gamma subunit (NCBI ptt file), at 2,259,476 to 2,263,288 recC Position (kb) 2255 2256 2257 2258 2259 2260Strain fitness (log2 ratio) -1 0 1at 2255.024 kb on + strand, within recDat 2259.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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2,255,024 + recD SO2147 0.71 -0.4
2,259,487 - +1.6

Or see this region's nucleotide sequence