Strain Fitness in Shewanella oneidensis MR-1 around SO2144

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
2,250,673	+		SO2143	0.73	+0.9
2,250,761	+		SO2143	0.78	-1.5
2,250,838	-		SO2143	0.83	-1.1
2,250,972	-				-0.1
2,251,017	+				-0.2
2,251,077	+				+0.7
2,251,077	+				+0.6
2,251,206	+				+0.3
2,251,206	+				+0.7
2,251,234	-				+0.0
2,251,302	+				-0.9
2,251,369	-				-0.3
2,251,369	-				-0.5
2,251,393	+				+1.2
2,251,407	+				-0.8
2,251,542	-				-0.8
2,251,593	-				+0.0
2,251,641	+				+0.9
2,251,689	+		SO2144	0.16	+0.2
2,251,697	-		SO2144	0.18	+1.4
2,251,702	-		SO2144	0.19	+1.2
2,251,713	+		SO2144	0.21	+0.9
2,251,749	+		SO2144	0.27	+0.0
2,251,756	+		SO2144	0.29	-0.1
2,251,891	+		SO2144	0.53	+0.4
2,251,922	+		SO2144	0.59	+0.8
2,251,928	+		SO2144	0.60	+0.1
2,251,928	+		SO2144	0.60	-0.2
2,252,036	+		SO2144	0.80	+0.2
2,252,108	-				+0.1
2,252,330	-		SO2145	0.21	+0.6
2,252,410	+		SO2145	0.29	+0.8
2,252,410	+		SO2145	0.29	+0.5
2,252,418	-		SO2145	0.30	+0.1
2,252,521	+		SO2145	0.41	-0.3
2,252,521	+		SO2145	0.41	-0.1
2,252,529	-		SO2145	0.42	+0.1
2,252,529	-		SO2145	0.42	-0.3
2,252,529	-		SO2145	0.42	-0.2
2,252,739	+		SO2145	0.64	-0.7
2,252,779	-		SO2145	0.69	-0.0
2,252,783	+		SO2145	0.69	+0.6
2,252,793	+		SO2145	0.70	-1.4
2,252,861	+		SO2145	0.77	+0.3
2,252,866	+		SO2145	0.78	-1.1
2,252,869	-		SO2145	0.78	+0.7
2,252,869	-		SO2145	0.78	-0.7
2,252,869	-		SO2145	0.78	+0.6
2,252,869	-		SO2145	0.78	-0.6
2,252,897	+		SO2145	0.81	+0.8
2,252,897	+		SO2145	0.81	-0.0
2,253,033	+				-1.1
2,253,043	+				-1.0
2,253,118	+		SO2146	0.12	-1.2
2,253,126	-		SO2146	0.14	+0.2