Strain Fitness in Shewanella oneidensis MR-1 around SO2013

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
2,108,982	-				-0.5
2,109,148	+				+0.6
2,109,160	+				+0.1
2,109,185	+				+0.6
2,109,205	+				-1.3
2,109,314	-				+0.8
2,109,529	+	apt	SO2012	0.43	+0.8
2,109,608	-	apt	SO2012	0.58	+0.3
2,109,857	+				-0.2
2,112,883	+				+0.7
2,112,903	+				-0.1
2,112,918	+				+1.4
2,112,972	-				-0.3
2,113,040	+				-0.0
2,113,040	+				+2.2
2,113,040	+				-0.6
2,113,040	+				-0.1
2,113,048	-				+0.7
2,113,048	-				-0.2
2,113,048	-				+0.5
2,113,048	-				-0.5
2,113,048	-				+1.6
2,113,175	-				-1.6
2,113,246	-		SO2014	0.11	-1.7
2,113,362	-		SO2014	0.46	-1.0
2,113,576	+				-2.4
2,113,691	+	recR	SO2015	0.23	-3.2
2,113,691	+	recR	SO2015	0.23	-2.4
2,113,864	+	recR	SO2015	0.52	-4.0
2,113,920	+	recR	SO2015	0.61	-1.7
2,113,922	-	recR	SO2015	0.62	-2.9