Strain Fitness in Shewanella oneidensis MR-1 around SO1901
Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.004 vol% |
---|---|---|---|---|---|
remove | |||||
2,000,498 | + | SO_1900 | 0.77 | -0.7 | |
2,000,542 | + | SO_1900 | 0.80 | +0.1 | |
2,000,542 | + | SO_1900 | 0.80 | -0.4 | |
2,000,565 | - | SO_1900 | 0.81 | -0.0 | |
2,000,567 | + | SO_1900 | 0.81 | -0.8 | |
2,000,639 | + | SO_1900 | 0.85 | -0.6 | |
2,000,639 | + | SO_1900 | 0.85 | +1.0 | |
2,000,646 | + | SO_1900 | 0.85 | +0.2 | |
2,000,647 | - | SO_1900 | 0.85 | +0.1 | |
2,000,647 | - | SO_1900 | 0.85 | -0.4 | |
2,000,885 | - | -0.1 | |||
2,000,899 | - | -1.1 | |||
2,000,899 | - | +0.9 | |||
2,000,900 | + | -0.3 | |||
2,000,926 | + | +0.2 | |||
2,000,941 | + | -1.9 | |||
2,001,043 | - | -0.4 | |||
2,001,254 | + | +0.3 | |||
2,001,322 | + | +0.0 | |||
2,001,359 | - | -0.9 | |||
2,001,431 | + | -0.8 | |||
2,001,641 | - | sugE | SO1901 | 0.47 | -0.4 |
2,001,742 | - | sugE | SO1901 | 0.79 | -2.2 |
2,001,797 | - | +0.2 | |||
2,001,797 | - | -0.4 | |||
2,001,959 | - | +0.0 | |||
2,002,013 | + | -0.1 | |||
2,002,021 | - | -0.2 | |||
2,002,021 | - | -0.6 | |||
2,002,030 | - | +1.3 | |||
2,002,081 | + | -0.2 | |||
2,002,222 | + | gnd | SO1902 | 0.12 | -0.1 |
2,002,222 | + | gnd | SO1902 | 0.12 | -0.5 |
2,002,293 | - | gnd | SO1902 | 0.16 | +0.3 |
2,002,315 | + | gnd | SO1902 | 0.18 | -0.4 |
2,002,329 | - | gnd | SO1902 | 0.19 | -0.1 |
2,002,329 | - | gnd | SO1902 | 0.19 | -0.8 |
2,002,329 | - | gnd | SO1902 | 0.19 | -1.3 |
2,002,329 | - | gnd | SO1902 | 0.19 | +0.2 |
2,002,356 | - | gnd | SO1902 | 0.20 | +0.6 |
2,002,546 | + | gnd | SO1902 | 0.33 | +0.4 |
2,002,611 | - | gnd | SO1902 | 0.37 | +0.0 |
2,002,611 | - | gnd | SO1902 | 0.37 | +0.8 |
2,002,803 | + | gnd | SO1902 | 0.50 | -0.7 |
Or see this region's nucleotide sequence