Strain Fitness in Shewanella oneidensis MR-1 around SO1901

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
2,000,498	+		SO_1900	0.77	-0.7
2,000,542	+		SO_1900	0.80	+0.1
2,000,542	+		SO_1900	0.80	-0.4
2,000,565	-		SO_1900	0.81	-0.0
2,000,567	+		SO_1900	0.81	-0.8
2,000,639	+		SO_1900	0.85	-0.6
2,000,639	+		SO_1900	0.85	+1.0
2,000,646	+		SO_1900	0.85	+0.2
2,000,647	-		SO_1900	0.85	+0.1
2,000,647	-		SO_1900	0.85	-0.4
2,000,885	-				-0.1
2,000,899	-				-1.1
2,000,899	-				+0.9
2,000,900	+				-0.3
2,000,926	+				+0.2
2,000,941	+				-1.9
2,001,043	-				-0.4
2,001,254	+				+0.3
2,001,322	+				+0.0
2,001,359	-				-0.9
2,001,431	+				-0.8
2,001,641	-	sugE	SO1901	0.47	-0.4
2,001,742	-	sugE	SO1901	0.79	-2.2
2,001,797	-				+0.2
2,001,797	-				-0.4
2,001,959	-				+0.0
2,002,013	+				-0.1
2,002,021	-				-0.2
2,002,021	-				-0.6
2,002,030	-				+1.3
2,002,081	+				-0.2
2,002,222	+	gnd	SO1902	0.12	-0.1
2,002,222	+	gnd	SO1902	0.12	-0.5
2,002,293	-	gnd	SO1902	0.16	+0.3
2,002,315	+	gnd	SO1902	0.18	-0.4
2,002,329	-	gnd	SO1902	0.19	-0.1
2,002,329	-	gnd	SO1902	0.19	-0.8
2,002,329	-	gnd	SO1902	0.19	-1.3
2,002,329	-	gnd	SO1902	0.19	+0.2
2,002,356	-	gnd	SO1902	0.20	+0.6
2,002,546	+	gnd	SO1902	0.33	+0.4
2,002,611	-	gnd	SO1902	0.37	+0.0
2,002,611	-	gnd	SO1902	0.37	+0.8
2,002,803	+	gnd	SO1902	0.50	-0.7