Strain Fitness in Shewanella oneidensis MR-1 around SO1880

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
1,974,553	-				+0.6
1,974,579	-				+1.5
1,975,817	+	nlpB	SO1880	0.26	-2.9
1,975,940	-	nlpB	SO1880	0.38	-1.1
1,975,974	+	nlpB	SO1880	0.41	+0.7
1,975,982	-	nlpB	SO1880	0.41	-1.2
1,976,153	+	nlpB	SO1880	0.57	-0.7
1,976,161	-	nlpB	SO1880	0.58	-0.5
1,976,161	-	nlpB	SO1880	0.58	-3.7
1,976,161	-	nlpB	SO1880	0.58	-2.3
1,976,187	+	nlpB	SO1880	0.60	-0.5
1,976,242	+	nlpB	SO1880	0.65	+0.7
1,976,242	+	nlpB	SO1880	0.65	-3.6
1,976,370	+	nlpB	SO1880	0.77	-0.5
1,976,370	+	nlpB	SO1880	0.77	-1.2
1,976,378	-	nlpB	SO1880	0.78	+1.0
1,976,574	+				-0.6
1,976,582	-				-0.1
1,976,582	-				+0.3
1,977,218	-				-0.2
1,977,397	-		SO1881	0.14	+0.3
1,977,398	-		SO1881	0.14	+0.6
1,977,445	-		SO1881	0.19	+0.9