Strain Fitness in Shewanella oneidensis MR-1 around SO1820

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
1,909,116	+	dinG	SO1819	0.64	-3.4
1,909,116	+	dinG	SO1819	0.64	-1.2
1,909,147	+	dinG	SO1819	0.65	-0.7
1,909,223	-	dinG	SO1819	0.69	-1.8
1,909,286	+	dinG	SO1819	0.72	-2.6
1,909,286	+	dinG	SO1819	0.72	-1.9
1,909,376	-	dinG	SO1819	0.76	-2.9
1,909,479	-	dinG	SO1819	0.81	-3.9
1,909,527	-	dinG	SO1819	0.84	-2.8
1,909,816	+				-2.5
1,909,904	-				-0.9
1,909,980	-				+0.9
1,909,991	+				+1.3
1,910,010	-				+0.2
1,910,033	+				+0.2
1,910,034	-				-0.4
1,910,042	+				+0.8
1,910,042	+				+2.0
1,910,050	-				-1.1
1,910,137	-				+0.1
1,910,156	-				-0.9
1,910,182	+				-0.9
1,910,267	+				+0.2
1,910,292	-				+1.3
1,910,312	-	polB	SO1820	0.11	+0.5
1,910,494	-	polB	SO1820	0.18	-0.2
1,910,621	-	polB	SO1820	0.23	+0.2
1,910,621	-	polB	SO1820	0.23	-0.3
1,910,652	-	polB	SO1820	0.25	-0.1
1,910,704	-	polB	SO1820	0.27	+0.1
1,910,718	+	polB	SO1820	0.27	-0.2
1,910,798	-	polB	SO1820	0.31	-0.1
1,911,152	-	polB	SO1820	0.45	+0.7
1,911,175	-	polB	SO1820	0.46	-0.6
1,911,196	-	polB	SO1820	0.47	-0.1
1,911,198	+	polB	SO1820	0.47	+0.1
1,911,206	-	polB	SO1820	0.47	-1.7
1,911,257	+	polB	SO1820	0.50	-0.3
1,911,385	+	polB	SO1820	0.55	-0.5
1,911,441	-	polB	SO1820	0.57	+0.0
1,911,548	+	polB	SO1820	0.62	-0.9
1,911,549	+	polB	SO1820	0.62	+0.1
1,911,557	-	polB	SO1820	0.62	+0.0
1,911,642	+	polB	SO1820	0.65	+0.2
1,911,684	+	polB	SO1820	0.67	+0.5
1,911,684	+	polB	SO1820	0.67	+0.3
1,911,825	+	polB	SO1820	0.73	-0.0
1,911,948	+	polB	SO1820	0.78	-0.3
1,911,948	+	polB	SO1820	0.78	-1.0
1,911,948	+	polB	SO1820	0.78	-1.7
1,911,956	-	polB	SO1820	0.78	-1.3
1,911,957	+	polB	SO1820	0.78	-0.5
1,911,957	+	polB	SO1820	0.78	+0.4
1,911,965	-	polB	SO1820	0.79	+1.7
1,911,965	-	polB	SO1820	0.79	-1.0
1,912,234	-	polB	SO1820	0.90	-0.2
1,912,330	+				-0.0
1,912,330	+				+0.6
1,912,335	+				-0.3
1,912,335	+				+1.1
1,912,894	+		SO1821	0.16	-0.7
1,912,896	-		SO1821	0.16	-1.1
1,912,973	-		SO1821	0.23	-0.7
1,913,202	+		SO1821	0.42	-0.7
1,913,294	-		SO1821	0.50	-1.1
1,913,332	+		SO1821	0.53	-0.2