Strain Fitness in Shewanella oneidensis MR-1 around SO1819

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
1,906,932	-		SO1817	0.86	-1.1
1,907,001	+				+1.0
1,907,076	-				+1.3
1,907,164	-		SO1818	0.20	+0.1
1,907,185	-		SO1818	0.22	+0.7
1,907,230	+		SO1818	0.28	-0.6
1,907,238	-		SO1818	0.29	-1.7
1,907,422	-		SO1818	0.53	+0.5
1,907,427	-		SO1818	0.53	-0.5
1,907,480	+		SO1818	0.60	-0.1
1,907,509	-		SO1818	0.64	+0.3
1,907,511	+		SO1818	0.64	+0.1
1,907,519	-		SO1818	0.65	-0.2
1,907,519	-		SO1818	0.65	-0.1
1,907,519	-		SO1818	0.65	+0.2
1,907,574	+		SO1818	0.72	-0.2
1,907,667	+		SO1818	0.84	-0.3
1,907,672	+		SO1818	0.85	+0.9
1,907,818	-				-1.7
1,907,910	-				-1.3
1,908,009	+	dinG	SO1819	0.10	-2.5
1,908,017	-	dinG	SO1819	0.11	-1.4
1,908,017	-	dinG	SO1819	0.11	-2.5
1,908,017	-	dinG	SO1819	0.11	-2.5
1,908,062	+	dinG	SO1819	0.13	-3.1
1,908,087	+	dinG	SO1819	0.14	-2.9
1,908,087	+	dinG	SO1819	0.14	-3.7
1,908,087	+	dinG	SO1819	0.14	-1.9
1,908,095	-	dinG	SO1819	0.14	-1.7
1,908,269	+	dinG	SO1819	0.23	-2.4
1,908,269	+	dinG	SO1819	0.23	-3.5
1,908,269	+	dinG	SO1819	0.23	-4.0
1,908,269	+	dinG	SO1819	0.23	-1.4
1,908,269	+	dinG	SO1819	0.23	-2.9
1,908,269	+	dinG	SO1819	0.23	-3.2
1,908,269	+	dinG	SO1819	0.23	-0.3
1,908,269	+	dinG	SO1819	0.23	+0.7
1,908,277	-	dinG	SO1819	0.23	-3.4
1,908,277	-	dinG	SO1819	0.23	-2.8
1,908,277	-	dinG	SO1819	0.23	-2.5
1,908,277	-	dinG	SO1819	0.23	-3.1
1,908,277	-	dinG	SO1819	0.23	-2.8
1,908,277	-	dinG	SO1819	0.23	-4.0
1,908,277	-	dinG	SO1819	0.23	-4.0
1,908,277	-	dinG	SO1819	0.23	-3.4
1,908,415	+	dinG	SO1819	0.30	-2.0
1,908,488	+	dinG	SO1819	0.33	-1.2
1,908,496	-	dinG	SO1819	0.34	-3.7
1,908,496	-	dinG	SO1819	0.34	-3.5
1,908,501	-	dinG	SO1819	0.34	-0.3
1,908,639	-	dinG	SO1819	0.41	+1.7
1,908,760	-	dinG	SO1819	0.47	-3.2
1,908,900	+	dinG	SO1819	0.53	-2.3
1,908,916	+	dinG	SO1819	0.54	-4.1
1,908,916	+	dinG	SO1819	0.54	-4.2
1,908,927	-	dinG	SO1819	0.55	-1.6
1,909,116	+	dinG	SO1819	0.64	-3.4
1,909,116	+	dinG	SO1819	0.64	-1.2
1,909,147	+	dinG	SO1819	0.65	-0.7
1,909,223	-	dinG	SO1819	0.69	-1.8
1,909,286	+	dinG	SO1819	0.72	-2.6
1,909,286	+	dinG	SO1819	0.72	-1.9
1,909,376	-	dinG	SO1819	0.76	-2.9
1,909,479	-	dinG	SO1819	0.81	-3.9
1,909,527	-	dinG	SO1819	0.84	-2.8
1,909,816	+				-2.5
1,909,904	-				-0.9
1,909,980	-				+0.9
1,909,991	+				+1.3
1,910,010	-				+0.2
1,910,033	+				+0.2
1,910,034	-				-0.4
1,910,042	+				+0.8
1,910,042	+				+2.0
1,910,050	-				-1.1
1,910,137	-				+0.1
1,910,156	-				-0.9
1,910,182	+				-0.9
1,910,267	+				+0.2
1,910,292	-				+1.3
1,910,312	-	polB	SO1820	0.11	+0.5
1,910,494	-	polB	SO1820	0.18	-0.2
1,910,621	-	polB	SO1820	0.23	+0.2
1,910,621	-	polB	SO1820	0.23	-0.3
1,910,652	-	polB	SO1820	0.25	-0.1
1,910,704	-	polB	SO1820	0.27	+0.1
1,910,718	+	polB	SO1820	0.27	-0.2
1,910,798	-	polB	SO1820	0.31	-0.1