Strain Fitness in Shewanella oneidensis MR-1 around SO1795

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
1,881,836	+				+0.3
1,881,836	+				-0.0
1,881,900	-				-0.0
1,882,028	+				-0.4
1,882,278	+	clpP	SO1794	0.45	-1.4
1,882,285	+	clpP	SO1794	0.47	-1.9
1,882,423	-	clpP	SO1794	0.69	-1.9
1,882,594	+				-0.5
1,882,625	+				+0.2
1,882,633	-				-1.3
1,882,666	+				-1.1
1,882,819	-				-2.0
1,882,949	+	clpX	SO1795	0.19	-2.7
1,883,145	+	clpX	SO1795	0.34	-1.3
1,883,153	-	clpX	SO1795	0.35	-3.1
1,883,158	-	clpX	SO1795	0.35	-1.3
1,883,327	+	clpX	SO1795	0.48	-0.5
1,883,328	-	clpX	SO1795	0.48	-1.9
1,883,342	+	clpX	SO1795	0.49	+0.7
1,883,500	+	clpX	SO1795	0.62	+1.1
1,883,530	+	clpX	SO1795	0.64	-3.0
1,883,538	-	clpX	SO1795	0.65	-1.0
1,883,562	+	clpX	SO1795	0.67	+0.7
1,883,740	+	clpX	SO1795	0.80	-1.9
1,884,062	+				+0.0
1,884,062	+				-0.1
1,884,080	-				+0.4
1,884,194	-				-2.4
1,884,747	-	lon	SO1796	0.27	-1.6
1,884,847	-	lon	SO1796	0.31	-0.5
1,884,983	-	lon	SO1796	0.37	+0.3