Strain Fitness in Shewanella oneidensis MR-1 around SO1549

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
1,622,888	+				+0.7
1,622,929	-				+0.3
1,622,984	-				-0.7
1,623,120	+				-0.4
1,623,146	-				+0.8
1,623,230	-				+0.4
1,623,304	+				-0.6
1,623,608	+		SO1548	0.60	-0.4
1,623,649	+		SO1548	0.70	-0.3
1,623,686	+		SO1548	0.79	-0.7
1,624,282	-	xni	SO1549	0.56	+0.9
1,624,312	+	xni	SO1549	0.60	+0.5
1,624,312	+	xni	SO1549	0.60	+0.8
1,624,432	+	xni	SO1549	0.77	+0.3
1,624,561	-				+1.7
1,624,578	-				-0.2
1,624,588	-				-0.8
1,624,612	-				-0.2
1,624,614	-				+1.1
1,624,727	-				-0.5
1,624,737	-				+0.9
1,624,797	+				+1.1
1,624,797	+				-1.1
1,624,799	-				-0.0
1,624,805	-				-1.1
1,624,805	-				-0.1
1,624,822	-		SO1550	0.10	-1.8
1,624,888	+		SO1550	0.15	+0.4
1,624,896	-		SO1550	0.16	+0.1
1,624,945	+		SO1550	0.19	+0.5
1,625,055	-		SO1550	0.27	-0.4
1,625,127	-		SO1550	0.33	+0.7
1,625,303	+		SO1550	0.46	-0.3
1,625,418	-		SO1550	0.54	-0.3
1,625,418	-		SO1550	0.54	-0.1
1,625,418	-		SO1550	0.54	+0.4
1,625,418	-		SO1550	0.54	-0.3
1,625,458	-		SO1550	0.57	+0.4
1,625,577	-		SO1550	0.66	+1.2