Strain Fitness in Shewanella oneidensis MR-1 around SO1489

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
1,553,204	+		SO1486	0.47	+0.6
1,553,252	+		SO1486	0.60	-0.4
1,553,252	+		SO1486	0.60	+0.4
1,553,252	+		SO1486	0.60	-0.7
1,553,252	+		SO1486	0.60	-1.4
1,553,260	-		SO1486	0.62	+1.5
1,553,287	-		SO1486	0.69	-0.4
1,553,295	-		SO1486	0.71	+0.6
1,553,339	-		SO1486	0.83	+0.2
1,553,428	-				-0.5
1,553,439	+				+0.2
1,553,619	-		SO1487	0.77	-0.2
1,553,632	-		SO1487	0.83	+0.7
1,553,642	+		SO1487	0.88	-1.5
1,553,643	+		SO1487	0.88	-0.8
1,553,747	+				+1.7
1,553,755	-				+0.5
1,554,028	+				+0.7
1,554,059	+				-0.6
1,554,067	-				+0.4
1,554,162	-				+0.3
1,554,163	-				-0.3
1,554,163	-				-0.1
1,554,173	-				-0.8
1,554,183	-				-0.2
1,554,252	-		SO1489	0.23	+0.2
1,554,385	-		SO1489	0.56	-3.1
1,554,452	-		SO1489	0.72	+0.6
1,554,488	+		SO1489	0.81	-1.1
1,554,604	+				-1.1
1,554,673	+				-0.2
1,554,728	+				-0.1
1,554,796	-				+0.6
1,554,855	+				-0.2
1,554,875	-				-1.0
1,554,889	+				-0.6
1,555,149	+				-0.2
1,555,244	-				+0.1
1,555,302	-				-0.1
1,555,321	+				-1.5
1,555,476	-	adhB	SO1490	0.20	-1.1
1,555,515	+	adhB	SO1490	0.23	-0.1
1,555,531	+	adhB	SO1490	0.25	-1.5