Strain Fitness in Shewanella oneidensis MR-1 around SO1432

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
1,494,142	+	dmsB-1	SO1430	0.64	+0.9
1,494,157	+	dmsB-1	SO1430	0.66	+0.1
1,494,262	+	dmsB-1	SO1430	0.81	+0.3
1,494,381	-				-0.6
1,494,495	+				-0.1
1,494,508	+				-0.8
1,494,515	+		SO1431	0.11	-0.6
1,494,523	-		SO1431	0.12	+0.6
1,494,595	-		SO1431	0.23	-0.8
1,494,677	+		SO1431	0.35	+0.3
1,494,683	-		SO1431	0.36	-0.8
1,494,721	-		SO1431	0.42	-0.1
1,494,728	+		SO1431	0.43	-0.1
1,494,728	-		SO1431	0.43	-0.6
1,494,731	-		SO1431	0.43	+0.2
1,494,738	+		SO1431	0.44	-2.6
1,494,738	+		SO1431	0.44	-0.3
1,494,738	+		SO1431	0.44	+0.2
1,494,738	+		SO1431	0.44	+0.3
1,494,738	+		SO1431	0.44	-1.0
1,494,746	-		SO1431	0.45	-0.5
1,494,746	-		SO1431	0.45	-0.3
1,494,746	-		SO1431	0.45	-0.6
1,494,746	-		SO1431	0.45	-1.4
1,494,746	-		SO1431	0.45	-0.2
1,494,746	-		SO1431	0.45	-0.4
1,494,746	-		SO1431	0.45	-0.1
1,494,746	-		SO1431	0.45	+0.0
1,494,746	-		SO1431	0.45	+0.5
1,494,746	-		SO1431	0.45	-0.0
1,494,746	-		SO1431	0.45	+0.4
1,494,746	-		SO1431	0.45	-0.3
1,494,763	-		SO1431	0.48	-0.4
1,494,831	-		SO1431	0.58	+0.6
1,494,841	-		SO1431	0.60	-0.6
1,494,841	-		SO1431	0.60	+0.3
1,494,848	-		SO1431	0.61	-0.3
1,494,918	+		SO1431	0.71	+0.5
1,494,922	+		SO1431	0.72	-0.3
1,494,922	+		SO1431	0.72	+0.2
1,494,923	+		SO1431	0.72	-0.2
1,494,930	-		SO1431	0.73	-0.8
1,494,930	-		SO1431	0.73	+0.6
1,494,931	-		SO1431	0.73	-2.4
1,494,939	+		SO1431	0.74	-0.4
1,494,951	-		SO1431	0.76	-0.2
1,494,979	+		SO1431	0.80	-1.2
1,494,979	+		SO1431	0.80	-0.6
1,494,979	+		SO1431	0.80	+0.2
1,494,987	-		SO1431	0.82	-1.0
1,494,987	-		SO1431	0.82	+0.6
1,494,987	-		SO1431	0.82	-0.6
1,494,987	-		SO1431	0.82	+0.3
1,495,028	+		SO1431	0.88	+1.2
1,495,038	+		SO1431	0.89	+0.2
1,495,046	-				-2.6
1,495,051	-				-0.2
1,495,082	+				+0.1
1,495,083	+				-0.6
1,495,090	-				-0.6
1,495,104	+				+1.4
1,495,116	+				+0.8
1,495,117	+				+0.3
1,495,117	+				+0.9
1,495,118	-				-0.4
1,495,119	+				+2.7
1,495,119	-				-0.4
1,495,124	-				-0.1
1,495,125	-				-0.7
1,495,133	-				+0.4
1,495,136	-				+0.9
1,495,143	-				+0.7
1,495,143	-				-0.7
1,495,151	+				-1.1
1,495,160	-				-0.6
1,495,193	-		SO1432	0.16	+0.7
1,495,242	-		SO1432	0.26	+0.2
1,495,282	+		SO1432	0.35	+1.7
1,495,295	+		SO1432	0.37	+0.6
1,495,300	+		SO1432	0.38	+0.4
1,495,300	+		SO1432	0.38	+0.1
1,495,308	-		SO1432	0.40	+1.2
1,495,322	+		SO1432	0.43	+0.6
1,495,322	+		SO1432	0.43	-0.6
1,495,322	+		SO1432	0.43	-0.3
1,495,330	-		SO1432	0.45	-0.5
1,495,330	-		SO1432	0.45	+0.2
1,495,367	+		SO1432	0.53	+0.3
1,495,376	-		SO1432	0.55	+1.3
1,495,480	-		SO1432	0.77	-0.8
1,495,487	-		SO1432	0.78	+0.5
1,495,512	+		SO1432	0.84	+1.2
1,495,520	-		SO1432	0.85	-1.2
1,495,531	-		SO1432	0.88	+0.2
1,495,531	-		SO1432	0.88	+0.1
1,495,547	+				+0.7
1,495,555	-				-0.5
1,495,555	-				+0.1
1,495,568	+				+0.2
1,495,617	+				-0.2
1,495,617	+				-0.8
1,495,625	-				-0.6
1,495,627	+				+0.4
1,495,709	+				-0.0
1,495,709	+				-0.0
1,495,717	-				+0.1
1,495,786	+				-0.6
1,495,794	-				+1.0
1,495,806	+				+0.7
1,495,812	-				-0.4
1,495,814	+				-0.1
1,495,822	-				-0.4
1,495,822	-				+0.2
1,495,822	-				-1.2
1,495,822	-				+0.1
1,495,900	-		SO1434	0.10	+0.1
1,495,912	-		SO1434	0.11	+1.2
1,495,915	+		SO1434	0.11	-0.3
1,495,920	+		SO1434	0.12	-0.6
1,495,925	+		SO1434	0.12	-0.1
1,495,933	-		SO1434	0.12	+1.3
1,495,933	-		SO1434	0.12	+0.7
1,495,962	-		SO1434	0.14	-0.2
1,495,973	+		SO1434	0.15	+0.4
1,496,104	-		SO1434	0.23	+0.2
1,496,128	+		SO1434	0.24	-0.0
1,496,180	+		SO1434	0.28	+1.2
1,496,188	-		SO1434	0.28	+0.5
1,496,193	+		SO1434	0.28	-1.1
1,496,201	-		SO1434	0.29	+0.5
1,496,382	-		SO1434	0.40	+1.2
1,496,384	-		SO1434	0.40	+0.6
1,496,433	-		SO1434	0.43	+0.3
1,496,433	-		SO1434	0.43	+0.0
1,496,433	-		SO1434	0.43	+0.3
1,496,435	+		SO1434	0.43	+1.0
1,496,435	+		SO1434	0.43	+1.0
1,496,435	+		SO1434	0.43	-0.1
1,496,435	+		SO1434	0.43	-1.3
1,496,469	+		SO1434	0.45	+0.5
1,496,469	+		SO1434	0.45	+0.4
1,496,517	+		SO1434	0.48	-1.3
1,496,532	-		SO1434	0.49	-0.4
1,496,554	-		SO1434	0.51	+0.7
1,496,556	+		SO1434	0.51	-0.6
1,496,564	+		SO1434	0.51	-0.4
1,496,572	-		SO1434	0.52	-0.8
1,496,572	-		SO1434	0.52	+0.5