Strain Fitness in Shewanella oneidensis MR-1 around SO1324

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
1,376,761	+		SO1323	0.46	+0.4
1,376,816	-		SO1323	0.73	+0.4
1,376,823	+		SO1323	0.76	+0.1
1,376,823	+		SO1323	0.76	-0.4
1,376,830	-		SO1323	0.80	+0.0
1,376,873	-				-0.2
1,376,895	+				+0.0
1,376,999	+				+0.4
1,377,008	-				-0.2
1,377,165	-	gltD	SO1324	0.16	+0.9
1,377,203	-	gltD	SO1324	0.19	-0.3
1,377,343	-	gltD	SO1324	0.29	-0.7
1,377,381	-	gltD	SO1324	0.32	+0.1
1,377,383	+	gltD	SO1324	0.32	-0.5
1,377,419	-	gltD	SO1324	0.34	-0.8
1,377,502	-	gltD	SO1324	0.40	-0.9
1,377,502	-	gltD	SO1324	0.40	-0.6
1,377,502	-	gltD	SO1324	0.40	+0.7
1,377,558	+	gltD	SO1324	0.44	+0.0
1,377,723	+	gltD	SO1324	0.56	+0.4
1,377,723	+	gltD	SO1324	0.56	+0.7
1,377,731	-	gltD	SO1324	0.57	-0.5
1,377,731	-	gltD	SO1324	0.57	+0.8
1,377,762	-	gltD	SO1324	0.59	-0.5
1,377,772	-	gltD	SO1324	0.60	-0.1
1,377,787	-	gltD	SO1324	0.61	+0.2
1,377,864	+	gltD	SO1324	0.66	-0.4
1,377,864	+	gltD	SO1324	0.66	+0.1
1,377,864	+	gltD	SO1324	0.66	+0.1
1,377,864	+	gltD	SO1324	0.66	-0.1
1,377,872	-	gltD	SO1324	0.67	-1.2
1,377,872	-	gltD	SO1324	0.67	+0.4
1,377,872	-	gltD	SO1324	0.67	-0.2
1,377,872	-	gltD	SO1324	0.67	-0.6
1,377,872	-	gltD	SO1324	0.67	+0.3
1,377,914	+	gltD	SO1324	0.70	+0.6
1,377,932	-	gltD	SO1324	0.71	-0.8
1,377,942	+	gltD	SO1324	0.72	+0.0
1,378,035	-	gltD	SO1324	0.78	+0.1
1,378,048	+	gltD	SO1324	0.79	-0.2
1,378,076	+	gltD	SO1324	0.81	+0.2
1,378,084	-	gltD	SO1324	0.82	+1.2
1,378,100	-	gltD	SO1324	0.83	+0.1
1,378,178	-	gltD	SO1324	0.88	-0.7
1,378,180	+	gltD	SO1324	0.89	-0.7
1,378,180	+	gltD	SO1324	0.89	-0.8
1,378,180	+	gltD	SO1324	0.89	-0.2
1,378,180	+	gltD	SO1324	0.89	+0.3
1,378,180	+	gltD	SO1324	0.89	+1.8
1,378,180	+	gltD	SO1324	0.89	+0.6
1,378,188	-	gltD	SO1324	0.89	+0.3
1,378,188	-	gltD	SO1324	0.89	+0.7
1,378,188	-	gltD	SO1324	0.89	+0.0
1,378,188	-	gltD	SO1324	0.89	-0.6
1,378,237	+				-0.2
1,378,382	+				-0.3
1,378,390	-				-0.1
1,378,390	-				-0.4
1,378,439	+				-1.4
1,378,719	+				-0.2
1,378,727	-				+0.6
1,378,744	+				+0.3
1,378,770	+				-0.2
1,378,770	+				-0.3
1,378,863	-	gltB	SO1325	0.12	-0.1
1,378,940	+	gltB	SO1325	0.13	-0.2
1,378,940	-	gltB	SO1325	0.13	-1.0
1,378,959	-	gltB	SO1325	0.14	-0.2
1,378,971	+	gltB	SO1325	0.14	+0.9
1,378,979	-	gltB	SO1325	0.14	+0.1
1,379,021	+	gltB	SO1325	0.15	+0.3
1,379,057	+	gltB	SO1325	0.16	-0.0
1,379,080	+	gltB	SO1325	0.16	+0.5