Strain Fitness in Shewanella oneidensis MR-1 around SO1233

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
1,283,778	-	torA	SO1232	0.61	-0.7
1,283,837	+	torA	SO1232	0.63	+0.6
1,283,845	-	torA	SO1232	0.63	+0.3
1,283,869	+	torA	SO1232	0.64	-0.3
1,283,906	-	torA	SO1232	0.66	+0.8
1,283,926	-				-1.2
1,283,941	+	torA	SO1232	0.67	+0.1
1,283,982	-	torA	SO1232	0.69	+0.1
1,284,047	+	torA	SO1232	0.72	-0.3
1,284,150	-	torA	SO1232	0.76	-0.7
1,284,178	+	torA	SO1232	0.77	+0.1
1,284,183	+	torA	SO1232	0.77	-0.1
1,284,276	-	torA	SO1232	0.81	+0.2
1,284,276	-	torA	SO1232	0.81	-0.6
1,284,351	+	torA	SO1232	0.84	-0.6
1,284,351	+	torA	SO1232	0.84	+0.6
1,284,372	+	torA	SO1232	0.85	-0.3
1,284,382	+	torA	SO1232	0.85	+0.2
1,284,402	-	torA	SO1232	0.86	+1.0
1,284,438	+	torA	SO1232	0.87	+0.7
1,284,446	+	torA	SO1232	0.88	-0.5
1,284,446	-	torA	SO1232	0.88	-0.9
1,284,446	-	torA	SO1232	0.88	+0.3
1,284,609	+				-0.4
1,284,627	+				+0.2
1,284,652	+				+0.7
1,284,657	+				-0.2
1,284,657	+				+0.1
1,284,657	+				+1.0
1,284,657	+				-0.3
1,284,657	+				+1.5
1,284,660	-				+0.2
1,284,660	-				+1.0
1,284,665	-				+1.5
1,284,744	+				-0.2
1,284,834	-				-1.2
1,284,834	-				-0.6
1,284,865	-				-0.6
1,284,867	+				+0.1
1,284,872	+				-0.1
1,284,931	-	torC	SO1233	0.14	+0.3
1,284,973	-	torC	SO1233	0.17	+1.2
1,285,086	-	torC	SO1233	0.27	+0.8
1,285,254	-	torC	SO1233	0.41	-0.1
1,285,337	+	torC	SO1233	0.48	+0.6
1,285,699	+	torC	SO1233	0.79	+0.8
1,285,720	+	torC	SO1233	0.81	-0.5
1,285,746	+	torC	SO1233	0.83	+0.7
1,285,838	-				-0.1
1,285,838	-				-1.2
1,285,874	+				+0.4
1,285,882	-				-0.2
1,285,885	+				+0.0
1,286,050	-	torE	SO1234	0.44	-0.0
1,286,088	+	torE	SO1234	0.66	+0.3
1,286,186	+				-0.7
1,286,193	+				-1.2
1,286,208	+				+0.4
1,286,208	+				+0.8
1,286,208	+				-0.7
1,286,298	+				-0.6
1,286,409	+				+0.6
1,286,417	-				+0.6
1,286,472	+				-0.3
1,286,480	-				+0.7
1,286,505	-				-0.2
1,286,689	-				+1.2
1,286,764	+				+0.1
1,286,772	-				+0.9
1,286,788	+				-0.5
1,286,821	-		SO1236	0.12	+0.2