Strain Fitness in Shewanella oneidensis MR-1 around SO1172

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1170 and nad are separated by 107 nucleotidesnad and holA are separated by 12 nucleotidesholA and SO1173 are separated by 52 nucleotidesSO1173 and leuS are separated by 59 nucleotides SO1170: SO1170 - iojap domain protein (NCBI ptt file), at 1,213,093 to 1,213,422 SO1170 SO1171: nad - nicotinate (nicotinamide) nucleotide adenylyltransferase (NCBI ptt file), at 1,213,530 to 1,214,168 nad SO1172: holA - DNA polymerase III, delta subunit (NCBI ptt file), at 1,214,181 to 1,215,212 holA SO1173: SO1173 - rare lipoprotein B (NCBI ptt file), at 1,215,265 to 1,215,759 SO1173 SO1174: leuS - leucyl-tRNA synthetase (NCBI ptt file), at 1,215,819 to 1,218,398 leuS Position (kb) 1214 1215 1216Strain fitness (log2 ratio) -1 0 1at 1213.434 kb on - strandat 1213.457 kb on + strandat 1213.466 kb on + strandat 1213.474 kb on - strandat 1214.186 kb on - strandat 1215.231 kb on - strandat 1215.238 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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1,213,434 - -0.6
1,213,457 + +0.2
1,213,466 + +0.8
1,213,474 - +0.6
1,214,186 - -0.5
1,215,231 - -0.2
1,215,238 - -0.8

Or see this region's nucleotide sequence