Strain Fitness in Shewanella oneidensis MR-1 around SO1157

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
1,200,650	-		SO1156	0.67	+0.7
1,200,698	+		SO1156	0.70	-0.5
1,200,776	+		SO1156	0.73	-0.4
1,200,831	+		SO1156	0.76	-1.8
1,200,848	+		SO1156	0.77	+0.4
1,200,851	-		SO1156	0.77	+0.0
1,200,980	-		SO1156	0.83	-1.6
1,200,986	-		SO1156	0.83	+1.0
1,201,000	+		SO1156	0.84	+0.3
1,201,008	-		SO1156	0.84	-0.3
1,201,020	-		SO1156	0.85	-2.8
1,201,126	-		SO1156	0.89	+0.5
1,201,230	+				-0.6
1,201,244	+				-0.5
1,201,252	-				+0.5
1,201,272	-				+0.6
1,201,417	-				+0.8
1,201,443	-				-0.2
1,201,443	-				+0.2
1,201,512	+		SO1157	0.11	+0.1
1,201,684	+		SO1157	0.26	-0.5
1,201,684	+		SO1157	0.26	-0.2
1,201,684	+		SO1157	0.26	-0.0
1,201,684	+		SO1157	0.26	+0.1
1,201,684	+		SO1157	0.26	-0.3
1,201,684	+		SO1157	0.26	-0.2
1,201,692	-		SO1157	0.27	-0.8
1,201,746	-		SO1157	0.31	-0.4
1,201,763	+		SO1157	0.33	-1.6
1,201,880	+		SO1157	0.43	-1.2
1,201,888	+		SO1157	0.44	+0.2
1,201,888	+		SO1157	0.44	+3.4
1,201,999	+		SO1157	0.53	+0.1
1,202,059	-		SO1157	0.58	+0.3
1,202,074	-		SO1157	0.59	-0.8
1,202,107	+		SO1157	0.62	-1.6
1,202,107	+		SO1157	0.62	-0.8
1,202,107	+		SO1157	0.62	-0.2
1,202,115	-		SO1157	0.63	-0.1
1,202,115	-		SO1157	0.63	-1.8
1,202,115	-		SO1157	0.63	-0.3
1,202,115	-		SO1157	0.63	-0.3
1,202,158	-		SO1157	0.67	-1.2
1,202,232	-		SO1157	0.73	-0.3
1,202,298	+		SO1157	0.79	+0.7
1,202,396	-		SO1157	0.87	+0.1
1,202,402	+		SO1157	0.88	-0.4
1,202,494	+				-0.1
1,202,529	+				-0.4
1,202,574	+				-1.1
1,202,775	+		SO1158	0.33	+1.2
1,202,814	-		SO1158	0.41	-0.2
1,202,953	+		SO1158	0.71	-0.6
1,202,958	+		SO1158	0.72	+1.0
1,203,006	+		SO1158	0.82	+0.2
1,203,016	-		SO1158	0.85	-0.6
1,203,039	-		SO1158	0.90	-0.4
1,203,108	-				-0.5
1,203,272	-				-0.3
1,203,272	-				+0.2
1,203,276	+				+0.3
1,203,476	+		SO1159	0.48	+0.8
1,203,484	-		SO1159	0.51	+0.8