Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xerD and dsbC are separated by 150 nucleotides dsbC and recJ are separated by 92 nucleotides recJ and SO0953 are separated by 43 nucleotides SO0953 and SO0954 are separated by 35 nucleotides SO0954 and SO0955 are separated by 59 nucleotides
SO0950: xerD - integrase/recombinase XerD (NCBI ptt file), at 986,481 to 987,383
xerD
SO0951: dsbC - thiol:disulfide interchange protein DsbC (NCBI ptt file), at 987,534 to 988,259
dsbC
SO0952: recJ - single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file), at 988,352 to 990,076
recJ
SO0953: SO0953 - hypothetical protein (NCBI ptt file), at 990,120 to 990,449
SO0953
SO0954: SO0954 - acetyltransferase, GNAT family (NCBI ptt file), at 990,485 to 990,904
SO0954
SO0955: SO0955 - hypothetical protein (NCBI ptt file), at 990,964 to 991,149
SO0955
Position (kb) 988
989
990
991 Strain fitness (log2 ratio) -2
-1
0
1 at 987.360 kb on - strand at 987.377 kb on + strand at 987.385 kb on - strand at 987.482 kb on + strand at 987.482 kb on + strand at 987.482 kb on + strand at 987.482 kb on + strand at 987.482 kb on + strand at 987.482 kb on + strand at 987.490 kb on - strand at 987.490 kb on - strand at 987.490 kb on - strand at 987.490 kb on - strand at 987.490 kb on - strand at 987.494 kb on + strand at 987.590 kb on - strand at 987.590 kb on - strand at 987.595 kb on - strand at 987.595 kb on - strand at 987.609 kb on + strand, within dsbC at 987.725 kb on + strand, within dsbC at 987.779 kb on + strand, within dsbC at 987.833 kb on - strand, within dsbC at 987.880 kb on - strand, within dsbC at 987.924 kb on - strand, within dsbC at 987.990 kb on + strand, within dsbC at 988.000 kb on - strand, within dsbC at 988.050 kb on + strand, within dsbC at 988.087 kb on - strand, within dsbC at 988.115 kb on - strand, within dsbC at 988.240 kb on + strand at 988.240 kb on + strand at 988.240 kb on + strand at 988.240 kb on + strand at 988.248 kb on - strand at 988.248 kb on - strand at 988.248 kb on - strand at 988.248 kb on - strand at 988.248 kb on - strand at 988.248 kb on - strand at 988.295 kb on + strand at 988.303 kb on - strand at 988.416 kb on - strand at 988.420 kb on + strand at 988.425 kb on - strand at 988.437 kb on - strand at 988.437 kb on - strand at 988.482 kb on - strand at 988.598 kb on + strand, within recJ at 988.682 kb on + strand, within recJ at 988.703 kb on - strand, within recJ at 988.719 kb on + strand, within recJ at 988.854 kb on - strand, within recJ at 988.934 kb on - strand, within recJ at 988.945 kb on + strand, within recJ at 988.950 kb on + strand, within recJ at 988.958 kb on - strand, within recJ at 989.013 kb on - strand, within recJ at 989.166 kb on - strand, within recJ at 989.281 kb on - strand, within recJ at 989.362 kb on + strand, within recJ at 989.387 kb on - strand, within recJ at 989.547 kb on + strand, within recJ at 989.649 kb on + strand, within recJ at 989.656 kb on + strand, within recJ at 989.692 kb on - strand, within recJ at 989.718 kb on - strand, within recJ at 989.733 kb on - strand, within recJ at 989.802 kb on + strand, within recJ at 989.809 kb on + strand, within recJ at 989.823 kb on + strand, within recJ at 989.898 kb on - strand, within recJ at 989.936 kb on - strand at 990.046 kb on + strand at 990.070 kb on + strand at 990.433 kb on + strand at 990.441 kb on - strand at 990.568 kb on + strand, within SO0954 at 990.568 kb on + strand, within SO0954 at 990.568 kb on + strand, within SO0954 at 990.581 kb on + strand, within SO0954 at 990.658 kb on - strand, within SO0954 at 990.669 kb on - strand, within SO0954 at 990.684 kb on + strand, within SO0954 at 990.726 kb on + strand, within SO0954 at 990.734 kb on - strand, within SO0954 at 990.734 kb on - strand, within SO0954 at 990.768 kb on + strand, within SO0954 at 991.034 kb on + strand, within SO0955 at 991.041 kb on + strand, within SO0955 at 991.057 kb on - strand, within SO0955 at 991.057 kb on - strand, within SO0955
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 987,360 - -1.0 987,377 + +0.4 987,385 - +1.4 987,482 + -0.1 987,482 + -0.3 987,482 + -0.1 987,482 + +0.0 987,482 + -0.7 987,482 + -0.2 987,490 - +0.2 987,490 - -0.4 987,490 - +0.3 987,490 - -0.1 987,490 - -0.8 987,494 + -0.1 987,590 - -1.0 987,590 - +0.0 987,595 - +0.1 987,595 - +0.0 987,609 + dsbC SO0951 0.10 +0.3 987,725 + dsbC SO0951 0.26 +0.4 987,779 + dsbC SO0951 0.34 +0.3 987,833 - dsbC SO0951 0.41 +0.4 987,880 - dsbC SO0951 0.48 +0.9 987,924 - dsbC SO0951 0.54 -0.3 987,990 + dsbC SO0951 0.63 +0.1 988,000 - dsbC SO0951 0.64 -0.9 988,050 + dsbC SO0951 0.71 -1.5 988,087 - dsbC SO0951 0.76 -0.6 988,115 - dsbC SO0951 0.80 +1.1 988,240 + -1.5 988,240 + +0.4 988,240 + -0.4 988,240 + -0.1 988,248 - -0.1 988,248 - +0.2 988,248 - +0.8 988,248 - -0.1 988,248 - +0.0 988,248 - +0.4 988,295 + -0.2 988,303 - -0.3 988,416 - -0.2 988,420 + -0.9 988,425 - -0.2 988,437 - -0.8 988,437 - -1.3 988,482 - -0.6 988,598 + recJ SO0952 0.14 -1.9 988,682 + recJ SO0952 0.19 -0.9 988,703 - recJ SO0952 0.20 -0.9 988,719 + recJ SO0952 0.21 -1.2 988,854 - recJ SO0952 0.29 -1.1 988,934 - recJ SO0952 0.34 -1.2 988,945 + recJ SO0952 0.34 -1.3 988,950 + recJ SO0952 0.35 -0.1 988,958 - recJ SO0952 0.35 -0.8 989,013 - recJ SO0952 0.38 +0.2 989,166 - recJ SO0952 0.47 -2.1 989,281 - recJ SO0952 0.54 -1.3 989,362 + recJ SO0952 0.59 -1.2 989,387 - recJ SO0952 0.60 -0.7 989,547 + recJ SO0952 0.69 +0.5 989,649 + recJ SO0952 0.75 -0.7 989,656 + recJ SO0952 0.76 -0.9 989,692 - recJ SO0952 0.78 -0.4 989,718 - recJ SO0952 0.79 -2.7 989,733 - recJ SO0952 0.80 -1.0 989,802 + recJ SO0952 0.84 -1.8 989,809 + recJ SO0952 0.84 -0.9 989,823 + recJ SO0952 0.85 +0.7 989,898 - recJ SO0952 0.90 -2.0 989,936 - -1.1 990,046 + -0.4 990,070 + -0.3 990,433 + -1.0 990,441 - -0.4 990,568 + SO0954 0.20 +0.5 990,568 + SO0954 0.20 -0.4 990,568 + SO0954 0.20 +0.1 990,581 + SO0954 0.23 -1.0 990,658 - SO0954 0.41 +0.6 990,669 - SO0954 0.44 +0.7 990,684 + SO0954 0.47 +0.0 990,726 + SO0954 0.57 -2.1 990,734 - SO0954 0.59 -2.0 990,734 - SO0954 0.59 -1.0 990,768 + SO0954 0.67 -1.1 991,034 + SO0955 0.38 +0.0 991,041 + SO0955 0.41 +0.2 991,057 - SO0955 0.50 +0.3 991,057 - SO0955 0.50 -0.1
Or see this region's nucleotide sequence