Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0919 and SO0920 are separated by 58 nucleotides SO0920 and SO0921 are separated by 223 nucleotides SO0921 and SO0922 are separated by 210 nucleotides
SO0919: SO0919 - serine transporter, putative (NCBI ptt file), at 949,385 to 950,677
SO0919
SO0920: SO0920 - acetyltransferase, GNAT family (NCBI ptt file), at 950,736 to 951,179
SO0920
SO0921: SO0921 - hypothetical protein (NCBI ptt file), at 951,403 to 951,699
SO0921
SO0922: SO0922 - proton/glutamate symporter (NCBI ptt file), at 951,910 to 953,184
SO0922
Position (kb) 951
952 Strain fitness (log2 ratio) -2
-1
0
1 at 950.513 kb on - strand, within SO0919 at 950.657 kb on - strand at 950.678 kb on + strand at 951.224 kb on - strand at 951.235 kb on - strand at 951.265 kb on + strand at 951.273 kb on - strand at 951.278 kb on - strand at 951.278 kb on - strand at 951.278 kb on - strand at 951.349 kb on + strand at 951.357 kb on - strand at 951.393 kb on - strand at 951.580 kb on + strand, within SO0921 at 951.588 kb on - strand, within SO0921 at 951.623 kb on + strand, within SO0921 at 951.651 kb on - strand, within SO0921 at 951.754 kb on - strand at 951.761 kb on - strand at 951.802 kb on - strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.822 kb on + strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.830 kb on - strand at 951.853 kb on + strand at 951.861 kb on - strand at 951.861 kb on - strand at 951.883 kb on + strand at 951.891 kb on - strand at 951.912 kb on - strand at 952.143 kb on + strand, within SO0922 at 952.151 kb on - strand, within SO0922 at 952.151 kb on - strand, within SO0922 at 952.165 kb on + strand, within SO0922 at 952.165 kb on + strand, within SO0922 at 952.165 kb on + strand, within SO0922 at 952.165 kb on + strand, within SO0922 at 952.165 kb on + strand, within SO0922 at 952.166 kb on + strand, within SO0922 at 952.166 kb on + strand, within SO0922 at 952.166 kb on + strand, within SO0922 at 952.173 kb on - strand, within SO0922 at 952.174 kb on - strand, within SO0922 at 952.177 kb on + strand, within SO0922 at 952.177 kb on + strand, within SO0922 at 952.185 kb on - strand, within SO0922 at 952.201 kb on + strand, within SO0922 at 952.391 kb on - strand, within SO0922 at 952.474 kb on + strand, within SO0922 at 952.617 kb on + strand, within SO0922 at 952.625 kb on - strand, within SO0922 at 952.642 kb on + strand, within SO0922
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 950,513 - SO0919 0.87 +0.7 950,657 - -0.0 950,678 + -0.1 951,224 - -0.6 951,235 - +0.7 951,265 + -0.3 951,273 - -0.0 951,278 - -1.0 951,278 - +0.2 951,278 - -0.1 951,349 + +0.4 951,357 - -1.5 951,393 - +0.2 951,580 + SO0921 0.60 +0.4 951,588 - SO0921 0.62 -0.8 951,623 + SO0921 0.74 -0.7 951,651 - SO0921 0.84 -1.1 951,754 - +0.8 951,761 - -0.1 951,802 - -1.2 951,816 + +0.1 951,816 + -0.0 951,816 + -0.1 951,816 + -0.3 951,816 + -0.1 951,816 + +0.7 951,816 + -2.6 951,816 + +0.9 951,816 + +0.9 951,816 + +0.2 951,816 + +1.4 951,816 + +0.0 951,822 + +0.2 951,824 - -0.3 951,824 - -0.2 951,824 - -0.5 951,824 - +1.0 951,824 - -1.5 951,824 - +1.2 951,824 - +0.5 951,824 - +0.6 951,824 - -0.1 951,830 - -2.1 951,853 + -0.8 951,861 - -2.5 951,861 - +1.1 951,883 + +0.1 951,891 - +1.2 951,912 - -0.8 952,143 + SO0922 0.18 -0.8 952,151 - SO0922 0.19 -0.5 952,151 - SO0922 0.19 -0.1 952,165 + SO0922 0.20 -0.5 952,165 + SO0922 0.20 -0.1 952,165 + SO0922 0.20 -0.6 952,165 + SO0922 0.20 +0.1 952,165 + SO0922 0.20 -1.5 952,166 + SO0922 0.20 -0.7 952,166 + SO0922 0.20 -0.3 952,166 + SO0922 0.20 +0.4 952,173 - SO0922 0.21 +0.9 952,174 - SO0922 0.21 +0.9 952,177 + SO0922 0.21 -1.5 952,177 + SO0922 0.21 +0.6 952,185 - SO0922 0.22 +0.0 952,201 + SO0922 0.23 +1.1 952,391 - SO0922 0.38 -0.1 952,474 + SO0922 0.44 -0.4 952,617 + SO0922 0.55 +0.1 952,625 - SO0922 0.56 -0.3 952,642 + SO0922 0.57 -1.6
Or see this region's nucleotide sequence