Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0822 and SO0823 are separated by 77 nucleotides SO0823 and SO0824 are separated by 204 nucleotides SO0824 and SO0826 are separated by 422 nucleotides
SO0822: SO0822 - outer membrane efflux family protein (NCBI ptt file), at 838,167 to 839,585
SO0822
SO0823: SO0823 - conserved hypothetical protein (NCBI ptt file), at 839,663 to 840,787
SO0823
SO0824: SO0824 - conserved hypothetical protein (NCBI ptt file), at 840,992 to 841,354
SO0824
SO0826: SO0826 - conserved hypothetical protein (NCBI ptt file), at 841,777 to 843,468
SO0826
Position (kb) 839
840
841 Strain fitness (log2 ratio) -2
-1
0
1
2 at 838.674 kb on + strand, within SO0822 at 838.735 kb on + strand, within SO0822 at 838.781 kb on + strand, within SO0822 at 838.781 kb on + strand, within SO0822 at 838.789 kb on - strand, within SO0822 at 838.832 kb on + strand, within SO0822 at 838.968 kb on + strand, within SO0822 at 839.194 kb on + strand, within SO0822 at 839.297 kb on - strand, within SO0822 at 839.347 kb on - strand, within SO0822 at 839.370 kb on - strand, within SO0822 at 839.375 kb on + strand, within SO0822 at 839.401 kb on - strand, within SO0822 at 839.401 kb on - strand, within SO0822 at 839.403 kb on + strand, within SO0822 at 839.677 kb on - strand at 839.705 kb on + strand at 839.795 kb on - strand, within SO0823 at 839.795 kb on - strand, within SO0823 at 839.886 kb on - strand, within SO0823 at 839.886 kb on - strand, within SO0823 at 839.892 kb on - strand, within SO0823 at 839.892 kb on - strand, within SO0823 at 839.893 kb on - strand, within SO0823 at 839.952 kb on - strand, within SO0823 at 839.952 kb on - strand, within SO0823 at 840.113 kb on - strand, within SO0823 at 840.115 kb on + strand, within SO0823 at 840.123 kb on - strand, within SO0823 at 840.123 kb on - strand, within SO0823 at 840.150 kb on - strand, within SO0823 at 840.192 kb on - strand, within SO0823 at 840.192 kb on - strand, within SO0823 at 840.274 kb on + strand, within SO0823 at 840.284 kb on + strand, within SO0823 at 840.385 kb on + strand, within SO0823 at 840.409 kb on - strand, within SO0823 at 840.587 kb on + strand, within SO0823 at 840.587 kb on + strand, within SO0823 at 840.633 kb on - strand, within SO0823 at 840.645 kb on - strand, within SO0823 at 840.726 kb on + strand at 840.771 kb on + strand at 840.771 kb on + strand at 840.771 kb on + strand at 840.771 kb on + strand at 840.771 kb on + strand at 840.771 kb on + strand at 840.779 kb on - strand at 840.779 kb on - strand at 840.779 kb on - strand at 840.779 kb on - strand at 840.779 kb on - strand at 840.894 kb on - strand at 840.900 kb on + strand at 840.958 kb on + strand at 840.966 kb on - strand at 841.005 kb on - strand at 841.140 kb on + strand, within SO0824 at 841.183 kb on + strand, within SO0824 at 841.191 kb on - strand, within SO0824 at 841.293 kb on + strand, within SO0824 at 841.293 kb on + strand, within SO0824 at 841.293 kb on + strand, within SO0824 at 841.295 kb on + strand, within SO0824 at 841.301 kb on - strand, within SO0824 at 841.321 kb on + strand at 841.321 kb on + strand at 841.407 kb on - strand at 841.452 kb on - strand at 841.457 kb on - strand at 841.485 kb on - strand at 841.721 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 838,674 + SO0822 0.36 +0.0 838,735 + SO0822 0.40 +1.2 838,781 + SO0822 0.43 -0.6 838,781 + SO0822 0.43 -0.5 838,789 - SO0822 0.44 -1.0 838,832 + SO0822 0.47 -1.1 838,968 + SO0822 0.56 +1.1 839,194 + SO0822 0.72 +1.0 839,297 - SO0822 0.80 -0.0 839,347 - SO0822 0.83 +0.4 839,370 - SO0822 0.85 -0.9 839,375 + SO0822 0.85 -0.9 839,401 - SO0822 0.87 +0.1 839,401 - SO0822 0.87 +0.3 839,403 + SO0822 0.87 +0.0 839,677 - -0.4 839,705 + -0.3 839,795 - SO0823 0.12 -0.4 839,795 - SO0823 0.12 -0.3 839,886 - SO0823 0.20 -0.1 839,886 - SO0823 0.20 +1.4 839,892 - SO0823 0.20 -1.3 839,892 - SO0823 0.20 +0.9 839,893 - SO0823 0.20 +1.5 839,952 - SO0823 0.26 -1.2 839,952 - SO0823 0.26 +0.2 840,113 - SO0823 0.40 +1.1 840,115 + SO0823 0.40 -0.0 840,123 - SO0823 0.41 +0.5 840,123 - SO0823 0.41 -0.3 840,150 - SO0823 0.43 -0.9 840,192 - SO0823 0.47 +0.2 840,192 - SO0823 0.47 -0.5 840,274 + SO0823 0.54 +0.5 840,284 + SO0823 0.55 +0.5 840,385 + SO0823 0.64 +1.8 840,409 - SO0823 0.66 +0.2 840,587 + SO0823 0.82 -0.1 840,587 + SO0823 0.82 +0.1 840,633 - SO0823 0.86 +0.4 840,645 - SO0823 0.87 +1.2 840,726 + +1.9 840,771 + +0.3 840,771 + -0.7 840,771 + +0.3 840,771 + +1.0 840,771 + +0.1 840,771 + +0.2 840,779 - +0.5 840,779 - +0.1 840,779 - -2.0 840,779 - +0.9 840,779 - -0.2 840,894 - -0.1 840,900 + +2.2 840,958 + -0.2 840,966 - +0.8 841,005 - +0.4 841,140 + SO0824 0.41 -0.4 841,183 + SO0824 0.53 -0.0 841,191 - SO0824 0.55 -0.3 841,293 + SO0824 0.83 +0.8 841,293 + SO0824 0.83 +0.2 841,293 + SO0824 0.83 -0.9 841,295 + SO0824 0.83 -0.1 841,301 - SO0824 0.85 -0.3 841,321 + -0.1 841,321 + +0.5 841,407 - +1.6 841,452 - -0.4 841,457 - +0.2 841,485 - -0.4 841,721 + +0.5
Or see this region's nucleotide sequence