Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0719 and SO0720 are separated by 227 nucleotides SO0720 and SO0721 are separated by 192 nucleotides SO0721 and katG-1 are separated by 667 nucleotides
SO0719: SO0719 - TonB-dependent receptor, putative (NCBI ptt file), at 734,402 to 736,645
SO0719
SO0720: SO0720 - hypothetical protein (NCBI ptt file), at 736,873 to 737,382
SO0720
SO0721: SO0721 - conserved hypothetical protein (NCBI ptt file), at 737,575 to 737,826
SO0721
SO0725: katG-1 - catalase/peroxidase HPI (NCBI ptt file), at 738,494 to 740,719
katG-1
Position (kb) 737
738 Strain fitness (log2 ratio) -1
0
1 at 736.652 kb on + strand at 736.760 kb on + strand at 736.800 kb on + strand at 736.824 kb on + strand at 736.867 kb on - strand at 736.897 kb on + strand at 736.905 kb on - strand at 737.006 kb on - strand, within SO0720 at 737.234 kb on - strand, within SO0720 at 737.258 kb on - strand, within SO0720 at 737.258 kb on - strand, within SO0720 at 737.277 kb on - strand, within SO0720 at 737.282 kb on + strand, within SO0720 at 737.285 kb on - strand, within SO0720 at 737.319 kb on + strand, within SO0720 at 737.421 kb on - strand at 737.426 kb on - strand at 737.444 kb on - strand at 737.451 kb on - strand at 737.461 kb on - strand at 737.517 kb on - strand at 737.617 kb on + strand, within SO0721 at 737.617 kb on + strand, within SO0721 at 737.642 kb on + strand, within SO0721 at 737.650 kb on - strand, within SO0721 at 737.685 kb on - strand, within SO0721 at 738.411 kb on + strand at 738.427 kb on - strand at 738.481 kb on - strand at 738.532 kb on - strand at 738.572 kb on + strand at 738.583 kb on + strand at 738.671 kb on + strand at 738.679 kb on - strand at 738.683 kb on + strand at 738.814 kb on - strand, within katG-1 at 738.824 kb on - strand, within katG-1
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 736,652 + -0.5 736,760 + -0.5 736,800 + -0.7 736,824 + -0.4 736,867 - -1.0 736,897 + +1.3 736,905 - -0.7 737,006 - SO0720 0.26 -0.1 737,234 - SO0720 0.71 +0.8 737,258 - SO0720 0.75 +0.3 737,258 - SO0720 0.75 +0.3 737,277 - SO0720 0.79 +0.2 737,282 + SO0720 0.80 -1.2 737,285 - SO0720 0.81 +0.1 737,319 + SO0720 0.87 +0.6 737,421 - -0.2 737,426 - +0.1 737,444 - +0.0 737,451 - +0.1 737,461 - -0.6 737,517 - +0.5 737,617 + SO0721 0.17 -1.1 737,617 + SO0721 0.17 -0.6 737,642 + SO0721 0.27 -1.0 737,650 - SO0721 0.30 -0.1 737,685 - SO0721 0.44 -0.2 738,411 + +0.7 738,427 - -0.2 738,481 - -0.1 738,532 - +0.9 738,572 + +1.4 738,583 + +0.4 738,671 + -0.0 738,679 - -0.4 738,683 + +0.1 738,814 - katG-1 SO0725 0.14 +0.0 738,824 - katG-1 SO0725 0.15 -0.2
Or see this region's nucleotide sequence