Strain Fitness in Shewanella oneidensis MR-1 around SO0229

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfusA-1 and tufA are separated by 71 nucleotidestufA and rpsJ are separated by 331 nucleotidesrpsJ and rplC are separated by 27 nucleotides SO0228: fusA-1 - translation elongation factor G (NCBI ptt file), at 241,889 to 243,985 fusA-1 SO0229: tufA - translation elongation factor Tu (NCBI ptt file), at 244,057 to 245,241 tufA SO0230: rpsJ - ribosomal protein S10 (NCBI ptt file), at 245,573 to 245,884 rpsJ SO0231: rplC - ribosomal protein L3 (NCBI ptt file), at 245,912 to 246,550 rplC Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1at 244.953 kb on - strand, within tufAat 245.096 kb on + strand, within tufAat 245.298 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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244,953 - tufA SO0229 0.76 -0.5
245,096 + tufA SO0229 0.88 -1.9
245,298 + +0.4

Or see this region's nucleotide sequence