Strain Fitness in Shewanella oneidensis MR-1 around SO_1799

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
1,888,343	+	ppiD	SO1798	0.59	+0.4
1,888,559	-	ppiD	SO1798	0.71	-0.1
1,888,564	-	ppiD	SO1798	0.71	-1.0
1,888,603	+	ppiD	SO1798	0.73	-0.5
1,888,801	+	ppiD	SO1798	0.84	-0.2
1,888,806	-	ppiD	SO1798	0.84	-0.2
1,888,866	+	ppiD	SO1798	0.87	-0.1
1,888,883	+	ppiD	SO1798	0.88	-2.1
1,888,890	+	ppiD	SO1798	0.89	-1.6
1,888,914	-	ppiD	SO1798	0.90	-1.4
1,889,104	+				-0.7
1,889,187	+				-0.2
1,889,378	+		SO_1799	0.49	-2.6
1,889,378	+		SO_1799	0.49	-0.2
1,889,386	-		SO_1799	0.53	-0.5
1,889,526	-				+2.0