Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0092 and Psest_0093 overlap by 4 nucleotides Psest_0093 and Psest_0094 overlap by 4 nucleotides Psest_0094 and Psest_0095 overlap by 1 nucleotides Psest_0095 and Psest_0096 overlap by 1 nucleotides
Psest_0092: Psest_0092 - phosphonate C-P lyase system protein PhnK, at 92,803 to 93,615
_0092
Psest_0093: Psest_0093 - Uncharacterized enzyme of phosphonate metabolism, at 93,612 to 94,481
_0093
Psest_0094: Psest_0094 - Uncharacterized enzyme of phosphonate metabolism, at 94,478 to 95,587
_0094
Psest_0095: Psest_0095 - phosphonate C-P lyase system protein PhnH, at 95,587 to 96,195
_0095
Psest_0096: Psest_0096 - phosphonate C-P lyase system protein PhnG, at 96,195 to 96,641
_0096
Position (kb)
94
95
96 Strain fitness (log2 ratio)
-1
0
1
2
3 at 93.715 kb on + strand, within Psest_0093 at 93.715 kb on + strand, within Psest_0093 at 93.715 kb on + strand, within Psest_0093 at 93.809 kb on - strand, within Psest_0093 at 93.809 kb on - strand, within Psest_0093 at 93.923 kb on - strand, within Psest_0093 at 93.952 kb on + strand, within Psest_0093 at 93.953 kb on - strand, within Psest_0093 at 94.096 kb on + strand, within Psest_0093 at 94.096 kb on + strand, within Psest_0093 at 94.096 kb on + strand, within Psest_0093 at 94.444 kb on + strand at 94.444 kb on + strand at 94.584 kb on + strand at 94.584 kb on + strand at 94.584 kb on + strand at 94.584 kb on + strand at 94.585 kb on - strand at 94.585 kb on - strand at 94.585 kb on - strand at 94.585 kb on - strand at 95.217 kb on + strand, within Psest_0094 at 95.217 kb on + strand, within Psest_0094 at 95.218 kb on - strand, within Psest_0094 at 95.218 kb on - strand, within Psest_0094 at 95.218 kb on - strand, within Psest_0094 at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.855 kb on + strand, within Psest_0095 at 95.855 kb on + strand, within Psest_0095 at 95.855 kb on + strand, within Psest_0095 at 95.855 kb on + strand, within Psest_0095 at 95.856 kb on - strand, within Psest_0095 at 95.856 kb on - strand at 96.036 kb on - strand, within Psest_0095 at 96.394 kb on + strand, within Psest_0096 at 96.535 kb on + strand, within Psest_0096
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 93,715 + Psest_0093 0.12 -1.2 93,715 + Psest_0093 0.12 -1.0 93,715 + Psest_0093 0.12 -0.2 93,809 - Psest_0093 0.23 -1.5 93,809 - Psest_0093 0.23 +1.3 93,923 - Psest_0093 0.36 -1.0 93,952 + Psest_0093 0.39 +0.3 93,953 - Psest_0093 0.39 -1.0 94,096 + Psest_0093 0.56 -0.2 94,096 + Psest_0093 0.56 +0.3 94,096 + Psest_0093 0.56 +0.8 94,444 + -0.1 94,444 + +0.3 94,584 + +1.3 94,584 + +0.3 94,584 + -1.5 94,584 + +0.3 94,585 - +0.6 94,585 - +0.3 94,585 - +0.8 94,585 - -0.2 95,217 + Psest_0094 0.67 +1.3 95,217 + Psest_0094 0.67 -1.5 95,218 - Psest_0094 0.67 -0.8 95,218 - Psest_0094 0.67 +1.3 95,218 - Psest_0094 0.67 -1.7 95,583 + +0.3 95,583 + +1.3 95,583 + +0.3 95,583 + +0.9 95,583 + +0.3 95,583 + +2.3 95,583 + +1.1 95,583 + +1.3 95,583 + -0.2 95,583 + +0.8 95,584 - +2.9 95,584 - +0.9 95,584 - +3.7 95,584 - +1.3 95,584 - -0.9 95,584 - +2.3 95,584 - +0.8 95,584 - -0.4 95,584 - +1.9 95,855 + Psest_0095 0.44 +1.3 95,855 + Psest_0095 0.44 -0.7 95,855 + Psest_0095 0.44 -0.0 95,855 + Psest_0095 0.44 +1.3 95,856 - Psest_0095 0.44 +1.7 95,856 - +1.3 96,036 - Psest_0095 0.74 +1.3 96,394 + Psest_0096 0.45 -0.2 96,535 + Psest_0096 0.76 +0.9
Or see this region's nucleotide sequence