Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0090 and Psest_0091 overlap by 11 nucleotides Psest_0091 and Psest_0092 are separated by 11 nucleotides Psest_0092 and Psest_0093 overlap by 4 nucleotides
Psest_0090: Psest_0090 - phosphonate metabolism protein PhnM, at 90,952 to 92,097
_0090
Psest_0091: Psest_0091 - phosphonate C-P lyase system protein PhnL, at 92,087 to 92,791
_0091
Psest_0092: Psest_0092 - phosphonate C-P lyase system protein PhnK, at 92,803 to 93,615
_0092
Psest_0093: Psest_0093 - Uncharacterized enzyme of phosphonate metabolism, at 93,612 to 94,481
_0093
Position (kb) 92
93 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 91.182 kb on - strand, within Psest_0090 at 91.374 kb on + strand, within Psest_0090 at 91.529 kb on + strand, within Psest_0090 at 91.529 kb on + strand, within Psest_0090 at 91.529 kb on + strand, within Psest_0090 at 91.530 kb on - strand, within Psest_0090 at 91.530 kb on - strand, within Psest_0090 at 91.530 kb on - strand, within Psest_0090 at 91.530 kb on - strand, within Psest_0090 at 91.530 kb on - strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.541 kb on + strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.542 kb on - strand, within Psest_0090 at 91.544 kb on + strand, within Psest_0090 at 91.545 kb on - strand, within Psest_0090 at 91.554 kb on - strand, within Psest_0090 at 92.080 kb on + strand at 92.080 kb on + strand at 92.080 kb on + strand at 92.081 kb on - strand at 92.081 kb on - strand at 92.503 kb on - strand, within Psest_0091 at 92.531 kb on + strand, within Psest_0091 at 92.531 kb on + strand, within Psest_0091 at 92.532 kb on - strand, within Psest_0091 at 92.532 kb on - strand, within Psest_0091 at 92.610 kb on + strand, within Psest_0091 at 92.610 kb on + strand, within Psest_0091 at 92.610 kb on + strand, within Psest_0091 at 92.610 kb on + strand, within Psest_0091 at 92.610 kb on + strand, within Psest_0091 at 92.610 kb on + strand, within Psest_0091 at 92.611 kb on - strand, within Psest_0091 at 92.611 kb on - strand, within Psest_0091 at 92.611 kb on - strand, within Psest_0091 at 92.611 kb on - strand, within Psest_0091 at 92.620 kb on - strand, within Psest_0091 at 92.838 kb on + strand at 92.839 kb on - strand at 92.839 kb on - strand at 92.840 kb on + strand at 93.386 kb on + strand, within Psest_0092 at 93.715 kb on + strand, within Psest_0093 at 93.715 kb on + strand, within Psest_0093 at 93.715 kb on + strand, within Psest_0093
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 91,182 - Psest_0090 0.20 +1.3 91,374 + Psest_0090 0.37 -0.7 91,529 + Psest_0090 0.50 +0.9 91,529 + Psest_0090 0.50 +2.1 91,529 + Psest_0090 0.50 +0.0 91,530 - Psest_0090 0.50 +1.3 91,530 - Psest_0090 0.50 -0.8 91,530 - Psest_0090 0.50 +1.3 91,530 - Psest_0090 0.50 +0.5 91,530 - Psest_0090 0.50 +0.3 91,541 + Psest_0090 0.51 +0.6 91,541 + Psest_0090 0.51 +0.9 91,541 + Psest_0090 0.51 -0.5 91,541 + Psest_0090 0.51 +0.3 91,541 + Psest_0090 0.51 +1.3 91,541 + Psest_0090 0.51 +1.4 91,541 + Psest_0090 0.51 +0.3 91,541 + Psest_0090 0.51 -1.0 91,541 + Psest_0090 0.51 +1.3 91,541 + Psest_0090 0.51 +3.1 91,541 + Psest_0090 0.51 +0.5 91,541 + Psest_0090 0.51 -0.2 91,541 + Psest_0090 0.51 +1.3 91,541 + Psest_0090 0.51 +0.3 91,541 + Psest_0090 0.51 -0.2 91,541 + Psest_0090 0.51 -0.2 91,541 + Psest_0090 0.51 +1.9 91,541 + Psest_0090 0.51 -0.2 91,541 + Psest_0090 0.51 +1.9 91,541 + Psest_0090 0.51 +1.6 91,541 + Psest_0090 0.51 -1.5 91,541 + Psest_0090 0.51 -0.2 91,541 + Psest_0090 0.51 +0.6 91,541 + Psest_0090 0.51 -1.3 91,541 + Psest_0090 0.51 -2.7 91,542 - Psest_0090 0.51 -0.5 91,542 - Psest_0090 0.51 +3.3 91,542 - Psest_0090 0.51 +0.3 91,542 - Psest_0090 0.51 -1.0 91,542 - Psest_0090 0.51 -1.0 91,542 - Psest_0090 0.51 +2.3 91,542 - Psest_0090 0.51 -1.0 91,542 - Psest_0090 0.51 -0.2 91,542 - Psest_0090 0.51 -1.5 91,542 - Psest_0090 0.51 +0.3 91,542 - Psest_0090 0.51 +1.3 91,542 - Psest_0090 0.51 +1.3 91,542 - Psest_0090 0.51 +0.3 91,542 - Psest_0090 0.51 -1.0 91,542 - Psest_0090 0.51 +0.1 91,542 - Psest_0090 0.51 -0.2 91,542 - Psest_0090 0.51 -0.2 91,542 - Psest_0090 0.51 +2.9 91,542 - Psest_0090 0.51 +0.3 91,542 - Psest_0090 0.51 -0.5 91,542 - Psest_0090 0.51 -0.7 91,542 - Psest_0090 0.51 +1.3 91,542 - Psest_0090 0.51 +1.6 91,542 - Psest_0090 0.51 +0.8 91,542 - Psest_0090 0.51 +0.3 91,542 - Psest_0090 0.51 +0.3 91,542 - Psest_0090 0.51 +0.3 91,542 - Psest_0090 0.51 +0.3 91,542 - Psest_0090 0.51 +0.0 91,542 - Psest_0090 0.51 +1.8 91,542 - Psest_0090 0.51 +1.3 91,544 + Psest_0090 0.52 +0.9 91,545 - Psest_0090 0.52 +0.5 91,554 - Psest_0090 0.53 -0.2 92,080 + +1.0 92,080 + +0.8 92,080 + +2.3 92,081 - +0.8 92,081 - +0.8 92,503 - Psest_0091 0.59 -1.0 92,531 + Psest_0091 0.63 +1.3 92,531 + Psest_0091 0.63 +1.8 92,532 - Psest_0091 0.63 -0.7 92,532 - Psest_0091 0.63 -1.8 92,610 + Psest_0091 0.74 +1.3 92,610 + Psest_0091 0.74 -0.2 92,610 + Psest_0091 0.74 +0.8 92,610 + Psest_0091 0.74 -0.7 92,610 + Psest_0091 0.74 -0.8 92,610 + Psest_0091 0.74 -2.4 92,611 - Psest_0091 0.74 +0.0 92,611 - Psest_0091 0.74 -0.7 92,611 - Psest_0091 0.74 +0.3 92,611 - Psest_0091 0.74 +1.3 92,620 - Psest_0091 0.76 -1.0 92,838 + +2.3 92,839 - +1.3 92,839 - +0.0 92,840 + +2.1 93,386 + Psest_0092 0.72 +1.5 93,715 + Psest_0093 0.12 -1.2 93,715 + Psest_0093 0.12 -1.0 93,715 + Psest_0093 0.12 -0.2
Or see this region's nucleotide sequence