Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0889

Experiment: LB 30C timecourse1 timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0888 and Psest_0889 are separated by 185 nucleotidesPsest_0889 and Psest_0890 are separated by 43 nucleotides Psest_0888: Psest_0888 - Uncharacterized membrane-anchored protein conserved in bacteria, at 964,958 to 966,293 _0888 Psest_0889: Psest_0889 - Lactoylglutathione lyase and related lyases, at 966,479 to 966,877 _0889 Psest_0890: Psest_0890 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 966,921 to 968,030 _0890 Position (kb) 966 967Strain fitness (log2 ratio) -2 -1 0 1 2 3at 965.540 kb on + strand, within Psest_0888at 965.551 kb on + strand, within Psest_0888at 965.551 kb on + strand, within Psest_0888at 965.552 kb on - strand, within Psest_0888at 965.552 kb on - strand, within Psest_0888at 965.647 kb on + strand, within Psest_0888at 965.647 kb on + strand, within Psest_0888at 965.647 kb on + strand, within Psest_0888at 965.648 kb on - strand, within Psest_0888at 965.648 kb on - strand, within Psest_0888at 965.648 kb on - strand, within Psest_0888at 965.648 kb on - strand, within Psest_0888at 965.652 kb on + strand, within Psest_0888at 965.653 kb on - strand, within Psest_0888at 965.653 kb on - strand, within Psest_0888at 965.653 kb on - strand, within Psest_0888at 965.669 kb on + strand, within Psest_0888at 965.789 kb on + strand, within Psest_0888at 965.789 kb on + strand, within Psest_0888at 965.910 kb on + strand, within Psest_0888at 965.910 kb on + strand, within Psest_0888at 965.911 kb on - strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.978 kb on + strand, within Psest_0888at 965.978 kb on + strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 966.081 kb on + strand, within Psest_0888at 966.081 kb on + strand, within Psest_0888at 966.081 kb on + strand, within Psest_0888at 966.081 kb on + strand, within Psest_0888at 966.082 kb on - strand, within Psest_0888at 966.082 kb on - strand, within Psest_0888at 966.144 kb on + strand, within Psest_0888at 966.144 kb on + strand, within Psest_0888at 966.144 kb on + strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.146 kb on + strand, within Psest_0888at 966.270 kb on - strandat 966.270 kb on - strandat 966.414 kb on - strandat 966.428 kb on - strandat 966.430 kb on - strandat 966.430 kb on - strandat 966.430 kb on - strandat 966.430 kb on - strandat 966.430 kb on - strandat 966.430 kb on - strandat 966.432 kb on + strandat 966.433 kb on - strandat 966.433 kb on - strandat 966.433 kb on - strandat 966.433 kb on - strandat 966.492 kb on + strandat 966.492 kb on + strandat 966.493 kb on - strandat 966.528 kb on + strand, within Psest_0889at 966.529 kb on - strand, within Psest_0889at 966.529 kb on - strand, within Psest_0889at 966.529 kb on - strand, within Psest_0889at 966.529 kb on - strand, within Psest_0889at 966.537 kb on + strand, within Psest_0889at 966.537 kb on + strand, within Psest_0889at 966.537 kb on + strand, within Psest_0889at 966.537 kb on + strand, within Psest_0889at 966.537 kb on + strand, within Psest_0889at 966.537 kb on + strand, within Psest_0889at 966.538 kb on - strand, within Psest_0889at 966.538 kb on - strand, within Psest_0889at 966.731 kb on + strand, within Psest_0889at 966.792 kb on + strand, within Psest_0889at 966.792 kb on + strand, within Psest_0889at 966.793 kb on - strand, within Psest_0889at 966.793 kb on - strand, within Psest_0889at 966.881 kb on + strandat 966.881 kb on + strandat 966.882 kb on - strandat 966.882 kb on - strandat 966.882 kb on - strandat 966.882 kb on - strandat 967.600 kb on + strand, within Psest_0890at 967.601 kb on - strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.633 kb on + strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.652 kb on - strand, within Psest_0890at 967.768 kb on + strand, within Psest_0890at 967.769 kb on - strand, within Psest_0890

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1
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965,540 + Psest_0888 0.44 -0.2
965,551 + Psest_0888 0.44 -1.8
965,551 + Psest_0888 0.44 +0.4
965,552 - Psest_0888 0.44 +0.1
965,552 - Psest_0888 0.44 -0.7
965,647 + Psest_0888 0.52 +0.2
965,647 + Psest_0888 0.52 -0.7
965,647 + Psest_0888 0.52 +0.4
965,648 - Psest_0888 0.52 +0.0
965,648 - Psest_0888 0.52 -0.0
965,648 - Psest_0888 0.52 +0.6
965,648 - Psest_0888 0.52 +1.2
965,652 + Psest_0888 0.52 -0.4
965,653 - Psest_0888 0.52 +0.6
965,653 - Psest_0888 0.52 +0.7
965,653 - Psest_0888 0.52 -0.1
965,669 + Psest_0888 0.53 -0.2
965,789 + Psest_0888 0.62 +0.4
965,789 + Psest_0888 0.62 -1.6
965,910 + Psest_0888 0.71 -1.1
965,910 + Psest_0888 0.71 +0.9
965,911 - Psest_0888 0.71 +0.1
965,974 + Psest_0888 0.76 +0.9
965,974 + Psest_0888 0.76 +1.7
965,974 + Psest_0888 0.76 -0.5
965,974 + Psest_0888 0.76 +1.0
965,974 + Psest_0888 0.76 +0.3
965,974 + Psest_0888 0.76 +0.3
965,974 + Psest_0888 0.76 -0.1
965,974 + Psest_0888 0.76 -2.2
965,974 + Psest_0888 0.76 +0.5
965,975 - Psest_0888 0.76 +0.1
965,975 - Psest_0888 0.76 +1.2
965,975 - Psest_0888 0.76 +0.5
965,975 - Psest_0888 0.76 -0.3
965,975 - Psest_0888 0.76 +0.7
965,975 - Psest_0888 0.76 -0.2
965,975 - Psest_0888 0.76 +0.9
965,975 - Psest_0888 0.76 +0.2
965,975 - Psest_0888 0.76 -0.2
965,975 - Psest_0888 0.76 +0.6
965,975 - Psest_0888 0.76 +0.2
965,975 - Psest_0888 0.76 -1.9
965,975 - Psest_0888 0.76 -0.0
965,978 + Psest_0888 0.76 +0.6
965,978 + Psest_0888 0.76 -0.5
965,979 - Psest_0888 0.76 +0.1
965,979 - Psest_0888 0.76 -0.1
965,979 - Psest_0888 0.76 +0.4
965,979 - Psest_0888 0.76 +0.4
965,979 - Psest_0888 0.76 -0.8
965,979 - Psest_0888 0.76 -1.2
965,979 - Psest_0888 0.76 +0.1
965,979 - Psest_0888 0.76 -1.9
965,979 - Psest_0888 0.76 -1.1
966,081 + Psest_0888 0.84 +0.8
966,081 + Psest_0888 0.84 -0.5
966,081 + Psest_0888 0.84 -0.5
966,081 + Psest_0888 0.84 +0.3
966,082 - Psest_0888 0.84 +0.1
966,082 - Psest_0888 0.84 -1.1
966,144 + Psest_0888 0.89 -0.9
966,144 + Psest_0888 0.89 -0.3
966,144 + Psest_0888 0.89 +0.2
966,145 - Psest_0888 0.89 -0.1
966,145 - Psest_0888 0.89 +0.4
966,145 - Psest_0888 0.89 -0.9
966,145 - Psest_0888 0.89 -0.7
966,145 - Psest_0888 0.89 -0.7
966,145 - Psest_0888 0.89 -0.7
966,145 - Psest_0888 0.89 +0.6
966,146 + Psest_0888 0.89 +0.3
966,270 - -1.4
966,270 - -0.0
966,414 - +0.2
966,428 - +0.2
966,430 - -0.1
966,430 - -2.1
966,430 - -0.1
966,430 - -1.0
966,430 - -0.7
966,430 - +0.1
966,432 + -2.3
966,433 - +0.3
966,433 - +0.2
966,433 - -0.2
966,433 - +0.6
966,492 + +1.1
966,492 + +0.2
966,493 - -0.3
966,528 + Psest_0889 0.12 +0.6
966,529 - Psest_0889 0.13 +0.0
966,529 - Psest_0889 0.13 +0.4
966,529 - Psest_0889 0.13 +0.4
966,529 - Psest_0889 0.13 -0.9
966,537 + Psest_0889 0.15 +0.0
966,537 + Psest_0889 0.15 +0.6
966,537 + Psest_0889 0.15 +0.7
966,537 + Psest_0889 0.15 -0.7
966,537 + Psest_0889 0.15 +0.1
966,537 + Psest_0889 0.15 -0.9
966,538 - Psest_0889 0.15 +0.8
966,538 - Psest_0889 0.15 -0.9
966,731 + Psest_0889 0.63 +1.5
966,792 + Psest_0889 0.78 -0.9
966,792 + Psest_0889 0.78 +0.1
966,793 - Psest_0889 0.79 +2.2
966,793 - Psest_0889 0.79 +0.5
966,881 + +0.7
966,881 + -0.4
966,882 - +0.4
966,882 - +0.2
966,882 - -0.4
966,882 - -1.2
967,600 + Psest_0890 0.61 +0.8
967,601 - Psest_0890 0.61 +0.1
967,627 + Psest_0890 0.64 +1.2
967,627 + Psest_0890 0.64 -0.4
967,627 + Psest_0890 0.64 +0.4
967,627 + Psest_0890 0.64 -0.6
967,628 - Psest_0890 0.64 +1.1
967,628 - Psest_0890 0.64 -0.9
967,628 - Psest_0890 0.64 +1.3
967,628 - Psest_0890 0.64 -1.4
967,628 - Psest_0890 0.64 -0.4
967,633 + Psest_0890 0.64 -0.4
967,634 - Psest_0890 0.64 -0.1
967,634 - Psest_0890 0.64 -0.4
967,634 - Psest_0890 0.64 -0.0
967,634 - Psest_0890 0.64 -0.6
967,651 + Psest_0890 0.66 +0.7
967,651 + Psest_0890 0.66 +3.0
967,651 + Psest_0890 0.66 +0.2
967,651 + Psest_0890 0.66 +0.2
967,651 + Psest_0890 0.66 +1.0
967,652 - Psest_0890 0.66 -0.0
967,768 + Psest_0890 0.76 -0.5
967,769 - Psest_0890 0.76 -0.5

Or see this region's nucleotide sequence